Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060093.seq
         (693 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D80009-1|BAA11504.2| 1285|Homo sapiens KIAA0187 protein.               95   3e-19
BC150252-1|AAI50253.1| 1282|Homo sapiens BMS1 homolog, ribosome ...    95   3e-19
BC043345-1|AAH43345.1| 1282|Homo sapiens BMS1 homolog, ribosome ...    95   3e-19
AL022344-4|CAI23617.1| 1282|Homo sapiens BMS1-like, ribosome ass...    95   3e-19
BC131568-1|AAI31569.1|   97|Homo sapiens BMS1P5 protein protein.       50   1e-05
BC065722-1|AAH65722.1|   97|Homo sapiens BMS1P5 protein protein.       50   1e-05
BC062776-1|AAH62776.1|   60|Homo sapiens KIAA1975 protein protein.     43   0.001
BC071736-1|AAH71736.1|   77|Homo sapiens LOC387693 protein protein.    37   0.059

>D80009-1|BAA11504.2| 1285|Homo sapiens KIAA0187 protein.
          Length = 1285

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = +2

Query: 470 KNKCNQHRRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEF 649
           + K  + R     V+ KKRR+T+IEC  D+N MID+AK ADLVL+L DASFGFEME FEF
Sbjct: 111 RQKLTEIRGPVTIVSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEF 170

Query: 650 LNICQVHG 673
           LNICQVHG
Sbjct: 171 LNICQVHG 178



 Score = 84.2 bits (199), Expect = 4e-16
 Identities = 40/84 (47%), Positives = 54/84 (64%)
 Frame = +3

Query: 258 ARQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKT 437
           AR+RNPKAFA+Q+AVR  R F R +D+ +KK HIP VD+TPLE              GK+
Sbjct: 40  ARKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKS 99

Query: 438 TLINNLIKSFIKTNVTNTDGPITM 509
           TLI  LI++F +  +T   GP+T+
Sbjct: 100 TLIQCLIRNFTRQKLTEIRGPVTI 123


>BC150252-1|AAI50253.1| 1282|Homo sapiens BMS1 homolog, ribosome
           assembly protein (yeast) protein.
          Length = 1282

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = +2

Query: 470 KNKCNQHRRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEF 649
           + K  + R     V+ KKRR+T+IEC  D+N MID+AK ADLVL+L DASFGFEME FEF
Sbjct: 108 RQKLTEIRGPVTIVSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEF 167

Query: 650 LNICQVHG 673
           LNICQVHG
Sbjct: 168 LNICQVHG 175



 Score = 84.2 bits (199), Expect = 4e-16
 Identities = 40/84 (47%), Positives = 54/84 (64%)
 Frame = +3

Query: 258 ARQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKT 437
           AR+RNPKAFA+Q+AVR  R F R +D+ +KK HIP VD+TPLE              GK+
Sbjct: 37  ARKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKS 96

Query: 438 TLINNLIKSFIKTNVTNTDGPITM 509
           TLI  LI++F +  +T   GP+T+
Sbjct: 97  TLIQCLIRNFTRQKLTEIRGPVTI 120


>BC043345-1|AAH43345.1| 1282|Homo sapiens BMS1 homolog, ribosome
           assembly protein (yeast) protein.
          Length = 1282

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = +2

Query: 470 KNKCNQHRRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEF 649
           + K  + R     V+ KKRR+T+IEC  D+N MID+AK ADLVL+L DASFGFEME FEF
Sbjct: 108 RQKLTEIRGPVTIVSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEF 167

Query: 650 LNICQVHG 673
           LNICQVHG
Sbjct: 168 LNICQVHG 175



 Score = 84.2 bits (199), Expect = 4e-16
 Identities = 40/84 (47%), Positives = 54/84 (64%)
 Frame = +3

Query: 258 ARQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKT 437
           AR+RNPKAFA+Q+AVR  R F R +D+ +KK HIP VD+TPLE              GK+
Sbjct: 37  ARKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKS 96

Query: 438 TLINNLIKSFIKTNVTNTDGPITM 509
           TLI  LI++F +  +T   GP+T+
Sbjct: 97  TLIQCLIRNFTRQKLTEIRGPVTI 120


>AL022344-4|CAI23617.1| 1282|Homo sapiens BMS1-like, ribosome
           assembly protein (yeast) protein.
          Length = 1282

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = +2

Query: 470 KNKCNQHRRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEF 649
           + K  + R     V+ KKRR+T+IEC  D+N MID+AK ADLVL+L DASFGFEME FEF
Sbjct: 108 RQKLTEIRGPVTIVSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEF 167

Query: 650 LNICQVHG 673
           LNICQVHG
Sbjct: 168 LNICQVHG 175



 Score = 84.2 bits (199), Expect = 4e-16
 Identities = 40/84 (47%), Positives = 54/84 (64%)
 Frame = +3

Query: 258 ARQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKT 437
           AR+RNPKAFA+Q+AVR  R F R +D+ +KK HIP VD+TPLE              GK+
Sbjct: 37  ARKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKS 96

Query: 438 TLINNLIKSFIKTNVTNTDGPITM 509
           TLI  LI++F +  +T   GP+T+
Sbjct: 97  TLIQCLIRNFTRQKLTEIRGPVTI 120


>BC131568-1|AAI31569.1|   97|Homo sapiens BMS1P5 protein protein.
          Length = 97

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 23/44 (52%), Positives = 31/44 (70%)
 Frame = +3

Query: 255 SARQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLE 386
           +A++RN  AFA+Q+AV   R F R  D+ ++K HIP VD TPLE
Sbjct: 36  NAQKRNANAFAVQSAVWMSRSFHRTLDLKTQKHHIPVVDGTPLE 79


>BC065722-1|AAH65722.1|   97|Homo sapiens BMS1P5 protein protein.
          Length = 97

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 23/44 (52%), Positives = 31/44 (70%)
 Frame = +3

Query: 255 SARQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLE 386
           +A++RN  AFA+Q+AV   R F R  D+ ++K HIP VD TPLE
Sbjct: 36  NAQKRNANAFAVQSAVWMSRSFHRTLDLKTQKHHIPVVDGTPLE 79


>BC062776-1|AAH62776.1|   60|Homo sapiens KIAA1975 protein protein.
          Length = 60

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +2

Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLL 607
           V+ KK R+T+IEC  D+N MID+A+ ADLV  L
Sbjct: 3   VSGKKLRLTIIECGCDINMMIDLAEVADLVAKL 35


>BC071736-1|AAH71736.1|   77|Homo sapiens LOC387693 protein protein.
          Length = 77

 Score = 37.1 bits (82), Expect = 0.059
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 258 ARQRNPKAFAIQNAVRAERQFRRREDVISK 347
           A++RNPKAFA+Q+AV   R F R +D+ +K
Sbjct: 37  AQKRNPKAFAVQSAVWMARSFHRTQDLKTK 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,064,089
Number of Sequences: 237096
Number of extensions: 1553012
Number of successful extensions: 2706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2706
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)