Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060067.seq
         (591 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF036490-1|ABO65076.1|  124|Homo sapiens NADH:ubiquinone oxidore...    30   5.3  
BC058920-1|AAH58920.1|  156|Homo sapiens NADH dehydrogenase (ubi...    30   5.3  
AF087660-1|AAD23566.1|  156|Homo sapiens NADH:ubiquinone oxidore...    30   5.3  
AC002400-1|AAC05814.1|  161|Homo sapiens Acyl carrier protein, M...    30   5.3  

>EF036490-1|ABO65076.1|  124|Homo sapiens NADH:ubiquinone
           oxidoreductase SDAP subunit protein.
          Length = 124

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 LLAPKPNRTVSLCNHYRTSPP-SSEATATRILSILKL 360
           +LA  P R   LC  Y   PP + E    R+L +LKL
Sbjct: 50  VLAQVPGRVTQLCRQYSDMPPLTLEGIQDRVLYVLKL 86


>BC058920-1|AAH58920.1|  156|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa protein.
          Length = 156

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 LLAPKPNRTVSLCNHYRTSPP-SSEATATRILSILKL 360
           +LA  P R   LC  Y   PP + E    R+L +LKL
Sbjct: 53  VLAQVPGRVTQLCRQYSDMPPLTLEGIQDRVLYVLKL 89


>AF087660-1|AAD23566.1|  156|Homo sapiens NADH:ubiquinone
           oxidoreductase SDAP subunit protein.
          Length = 156

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 LLAPKPNRTVSLCNHYRTSPP-SSEATATRILSILKL 360
           +LA  P R   LC  Y   PP + E    R+L +LKL
Sbjct: 53  VLAQVPGRVTQLCRQYSDMPPLTLEGIQDRVLYVLKL 89


>AC002400-1|AAC05814.1|  161|Homo sapiens Acyl carrier protein,
           Mitochondrial (ACP) (5'partial) protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 LLAPKPNRTVSLCNHYRTSPP-SSEATATRILSILKL 360
           +LA  P R   LC  Y   PP + E    R+L +LKL
Sbjct: 58  VLAQVPGRVTQLCRQYSDMPPLTLEGIQDRVLYVLKL 94


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.316    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,840,110
Number of Sequences: 237096
Number of extensions: 1166465
Number of successful extensions: 2404
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2403
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)