Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0001
         (367 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein prot...    31   0.86 
BC057783-1|AAH57783.1|  275|Homo sapiens SFRS2B protein protein.       31   1.5  
AF031166-1|AAK54351.1|  272|Homo sapiens SRp46 splicing factor p...    31   1.5  
AF031165-1|AAK54350.1|  282|Homo sapiens SRp46 splicing factor p...    31   1.5  
AY157990-1|AAN76325.1| 1778|Homo sapiens myeloid/lymphoid or mix...    30   2.0  
AY147037-1|AAN17675.1| 1858|Homo sapiens MLL5 protein.                 30   2.0  
AF519459-1|AAM74947.1| 1858|Homo sapiens MLL5 protein.                 30   2.0  
AK027439-1|BAB55111.1|  507|Homo sapiens protein ( Homo sapiens ...    28   8.0  

>AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein protein.
          Length = 1569

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 101  TDTLKTNNMQVANGVSQQIYLNGPDQVVPAESYTTAIPGCHVKLRIAPRGLAAEPPISVP 280
            T+ +   N  V    + +I+L G   V+   +YT      HV+L + P  L+    IS+P
Sbjct: 911  TENVICGNSGVTCSRAIKIFLGGLSVVLADRNYTVTGEEPHVQLGVTPGALSLVVDISIP 970

Query: 281  GLLSRT 298
            G  + T
Sbjct: 971  GRYNLT 976


>BC057783-1|AAH57783.1|  275|Homo sapiens SFRS2B protein protein.
          Length = 275

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 76  NGYS*ERCYRYP*NKQHASGEWSQSTNILKRTGSSSARRKLHNSNS---WMSRQTS--HR 240
           +GYS  R  RY  ++ H+    S S+     + SSSARR   +S S     SR +S    
Sbjct: 186 SGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRS 245

Query: 241 PPRLSSGAS 267
           PPR+S   S
Sbjct: 246 PPRVSKRKS 254


>AF031166-1|AAK54351.1|  272|Homo sapiens SRp46 splicing factor
           protein.
          Length = 272

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 76  NGYS*ERCYRYP*NKQHASGEWSQSTNILKRTGSSSARRKLHNSNS---WMSRQTS--HR 240
           +GYS  R  RY  ++ H+    S S+     + SSSARR   +S S     SR +S    
Sbjct: 183 SGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRS 242

Query: 241 PPRLSSGAS 267
           PPR+S   S
Sbjct: 243 PPRVSKRKS 251


>AF031165-1|AAK54350.1|  282|Homo sapiens SRp46 splicing factor
           protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 76  NGYS*ERCYRYP*NKQHASGEWSQSTNILKRTGSSSARRKLHNSNS---WMSRQTS--HR 240
           +GYS  R  RY  ++ H+    S S+     + SSSARR   +S S     SR +S    
Sbjct: 193 SGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRS 252

Query: 241 PPRLSSGAS 267
           PPR+S   S
Sbjct: 253 PPRVSKRKS 261


>AY157990-1|AAN76325.1| 1778|Homo sapiens myeloid/lymphoid or
            mixed-lineage leukemia 5 protein.
          Length = 1778

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 119  NNMQVANGVSQQ-IYLNGPDQVVPAESYTTAIPGCHV 226
            N  Q+   +SQQ ++ +GP+Q +P  +    +PG HV
Sbjct: 1488 NYNQLKGSLSQQTVFTSGPNQALPGTTSQQTVPGHHV 1524


>AY147037-1|AAN17675.1| 1858|Homo sapiens MLL5 protein.
          Length = 1858

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 119  NNMQVANGVSQQ-IYLNGPDQVVPAESYTTAIPGCHV 226
            N  Q+   +SQQ ++ +GP+Q +P  +    +PG HV
Sbjct: 1568 NYNQLKGSLSQQTVFTSGPNQALPGTTSQQTVPGHHV 1604


>AF519459-1|AAM74947.1| 1858|Homo sapiens MLL5 protein.
          Length = 1858

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 119  NNMQVANGVSQQ-IYLNGPDQVVPAESYTTAIPGCHV 226
            N  Q+   +SQQ ++ +GP+Q +P  +    +PG HV
Sbjct: 1568 NYNQLKGSLSQQTVFTSGPNQALPGTTSQQTVPGHHV 1604


>AK027439-1|BAB55111.1|  507|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14533 fis, clone NT2RM2000407, moderately
           similar to Mus musculus semaphorin VIa mRNA. ).
          Length = 507

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 95  GATDTLKT--NNMQVANGVSQQIYLNGPDQVVPAESYTTAI 211
           G TD L    N+    NGV ++ YL G DQ+VP      A+
Sbjct: 92  GNTDGLGDCHNSFVALNGVIRESYLKGHDQLVPVTLLAIAV 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,042,836
Number of Sequences: 237096
Number of extensions: 1201138
Number of successful extensions: 2650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2650
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)