Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40009
         (876 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-260|AAS64790.2| 1998|Drosophila melanogaster CG33558-PA...    31   2.8  
AE014296-2186|AAF49883.1|  697|Drosophila melanogaster CG10969-P...    30   4.8  
S63550-1|AAB27433.1|  921|Drosophila melanogaster transcription ...    29   8.4  
BT025195-1|ABF17886.2|  851|Drosophila melanogaster FI01125p pro...    29   8.4  
AY069807-1|AAL39952.1|  851|Drosophila melanogaster SD04735p pro...    29   8.4  
AE014296-2641|AAS64986.1|  851|Drosophila melanogaster CG5444-PD...    29   8.4  
AE014296-2640|AAO41248.1|  851|Drosophila melanogaster CG5444-PC...    29   8.4  
AE014296-2639|AAF49536.1|  921|Drosophila melanogaster CG5444-PB...    29   8.4  
AE014296-2638|AAF49535.1|  921|Drosophila melanogaster CG5444-PA...    29   8.4  

>AE013599-260|AAS64790.2| 1998|Drosophila melanogaster CG33558-PA
           protein.
          Length = 1998

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 703 LSPQSNWRSGAASNMLQMRYPSP 635
           LS QSN R G+ +N+LQ + PSP
Sbjct: 417 LSAQSNHRQGSGNNLLQRQCPSP 439


>AE014296-2186|AAF49883.1|  697|Drosophila melanogaster CG10969-PA
           protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 57  QQQLNAQVNNPSQNVEIKGCFP-SSTETSRLNHLYNLQQHLR 179
           QQQ N   N P  NV+ KGC      + S     YNLQQ ++
Sbjct: 369 QQQRNCGRNPPCPNVKPKGCLKCQEQQQSGKAFAYNLQQSMQ 410


>S63550-1|AAB27433.1|  921|Drosophila melanogaster transcription
           initiation factorTFIID 110 kda protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 401 EVKLEAPEIKQTTQIKTEPHNSNQQQSLD 487
           ++  +AP++ Q TQI+T P   +QQQ ++
Sbjct: 239 QLNAQAPQLPQITQIQTIPAQQSQQQQVN 267


>BT025195-1|ABF17886.2|  851|Drosophila melanogaster FI01125p
           protein.
          Length = 851

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 401 EVKLEAPEIKQTTQIKTEPHNSNQQQSLD 487
           ++  +AP++ Q TQI+T P   +QQQ ++
Sbjct: 169 QLNAQAPQLPQITQIQTIPAQQSQQQQVN 197


>AY069807-1|AAL39952.1|  851|Drosophila melanogaster SD04735p
           protein.
          Length = 851

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 401 EVKLEAPEIKQTTQIKTEPHNSNQQQSLD 487
           ++  +AP++ Q TQI+T P   +QQQ ++
Sbjct: 169 QLNAQAPQLPQITQIQTIPAQQSQQQQVN 197


>AE014296-2641|AAS64986.1|  851|Drosophila melanogaster CG5444-PD,
           isoform D protein.
          Length = 851

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 401 EVKLEAPEIKQTTQIKTEPHNSNQQQSLD 487
           ++  +AP++ Q TQI+T P   +QQQ ++
Sbjct: 169 QLNAQAPQLPQITQIQTIPAQQSQQQQVN 197


>AE014296-2640|AAO41248.1|  851|Drosophila melanogaster CG5444-PC,
           isoform C protein.
          Length = 851

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 401 EVKLEAPEIKQTTQIKTEPHNSNQQQSLD 487
           ++  +AP++ Q TQI+T P   +QQQ ++
Sbjct: 169 QLNAQAPQLPQITQIQTIPAQQSQQQQVN 197


>AE014296-2639|AAF49536.1|  921|Drosophila melanogaster CG5444-PB,
           isoform B protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 401 EVKLEAPEIKQTTQIKTEPHNSNQQQSLD 487
           ++  +AP++ Q TQI+T P   +QQQ ++
Sbjct: 239 QLNAQAPQLPQITQIQTIPAQQSQQQQVN 267


>AE014296-2638|AAF49535.1|  921|Drosophila melanogaster CG5444-PA,
           isoform A protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 401 EVKLEAPEIKQTTQIKTEPHNSNQQQSLD 487
           ++  +AP++ Q TQI+T P   +QQQ ++
Sbjct: 239 QLNAQAPQLPQITQIQTIPAQQSQQQQVN 267


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,813,896
Number of Sequences: 53049
Number of extensions: 919013
Number of successful extensions: 2985
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2983
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)