Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10406
         (813 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM156951-1|CAJ42350.1|  292|Drosophila melanogaster porin protein.     29   10.0 
AE014134-1972|ABC65893.1|  361|Drosophila melanogaster CG17140-P...    29   10.0 
AE014134-1971|AAF53018.2|  361|Drosophila melanogaster CG17140-P...    29   10.0 

>AM156951-1|CAJ42350.1|  292|Drosophila melanogaster porin protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 291 WSSSIRVNFYAIENVKKLALSTQ 359
           W+ +I+ N Y+ ENVK+ A+  Q
Sbjct: 211 WAFAIKTNLYSSENVKQFAIGVQ 233


>AE014134-1972|ABC65893.1|  361|Drosophila melanogaster CG17140-PB,
           isoform B protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 291 WSSSIRVNFYAIENVKKLALSTQ 359
           W+ +I+ N Y+ ENVK+ A+  Q
Sbjct: 280 WAFAIKTNLYSSENVKQFAIGVQ 302


>AE014134-1971|AAF53018.2|  361|Drosophila melanogaster CG17140-PA,
           isoform A protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 291 WSSSIRVNFYAIENVKKLALSTQ 359
           W+ +I+ N Y+ ENVK+ A+  Q
Sbjct: 280 WAFAIKTNLYSSENVKQFAIGVQ 302


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,756,772
Number of Sequences: 53049
Number of extensions: 592155
Number of successful extensions: 1243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)