Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00016
         (511 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...   105   5e-23
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...   105   5e-23
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...   105   5e-23
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    99   4e-21

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score =  105 bits (251), Expect = 5e-23
 Identities = 49/57 (85%), Positives = 55/57 (96%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVK 57



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score =  105 bits (251), Expect = 5e-23
 Identities = 49/57 (85%), Positives = 55/57 (96%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVK 57



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score =  105 bits (251), Expect = 5e-23
 Identities = 49/57 (85%), Positives = 55/57 (96%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVK 57



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 47/57 (82%), Positives = 53/57 (92%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE INV+
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVK 57



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,894,085
Number of Sequences: 53049
Number of extensions: 356393
Number of successful extensions: 1188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)