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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0027
         (691 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122066-1|AAM52578.1|  690|Drosophila melanogaster AT09438p pro...   107   1e-23
AE013599-2499|AAG22261.1|  690|Drosophila melanogaster CG4878-PB...   107   1e-23
AE013599-2498|AAF57842.1|  690|Drosophila melanogaster CG4878-PA...   107   1e-23
AY051717-1|AAK93141.1|  638|Drosophila melanogaster LD24903p pro...    42   8e-04
AE014296-3624|AAF51786.1|  638|Drosophila melanogaster CG7414-PA...    42   8e-04
AF367178-1|AAK31264.1|  747|Drosophila melanogaster chromatin as...    34   0.16 
AE013599-1108|AAF58788.1|  747|Drosophila melanogaster CG12892-P...    34   0.16 
U07652-1|AAA20518.1|  390|Drosophila melanogaster La/SS-B protein.     30   3.4  
L32988-1|AAA21776.1|  390|Drosophila melanogaster La ribonucleop...    30   3.4  
AY075257-1|AAL68124.1|  390|Drosophila melanogaster AT22034p pro...    30   3.4  
AE014134-3230|AAN11073.1|  390|Drosophila melanogaster CG10922-P...    30   3.4  
AE014134-3229|AAF53885.1|  390|Drosophila melanogaster CG10922-P...    30   3.4  
AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-P...    29   7.9  

>AY122066-1|AAM52578.1|  690|Drosophila melanogaster AT09438p
           protein.
          Length = 690

 Score =  107 bits (258), Expect = 1e-23
 Identities = 51/85 (60%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLD-TNDFTIMNVADHYQMSGIEWDPTGRY 178
           E+K   HLFWSP GQFIV+ANL  T G  EF+D TND+ I    DH++ S +EWDPTGRY
Sbjct: 489 EKKSCTHLFWSPRGQFIVMANL--TMGTFEFVDSTNDYIITASPDHFRASEVEWDPTGRY 546

Query: 179 VVTGVSSXKCKMDCGYYIWSFQGKI 253
           VVTGVSS K K D G+ +++FQG+I
Sbjct: 547 VVTGVSSWKVKEDTGFNMYTFQGRI 571



 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 42/88 (47%), Positives = 55/88 (62%)
 Frame = +1

Query: 244 GQDTRRVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELV 423
           G+  +R + + F QF WRPRPPTLLS             YY+ FE KDR+R ++ASKEL+
Sbjct: 569 GRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELL 628

Query: 424 AKRTEQMKKFTEYRESKIQEWNEQKPRR 507
            KR++  + F EYR  +I EW EQK RR
Sbjct: 629 EKRSQLRETFMEYRNKRIAEWAEQKSRR 656


>AE013599-2499|AAG22261.1|  690|Drosophila melanogaster CG4878-PB,
           isoform B protein.
          Length = 690

 Score =  107 bits (258), Expect = 1e-23
 Identities = 51/85 (60%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLD-TNDFTIMNVADHYQMSGIEWDPTGRY 178
           E+K   HLFWSP GQFIV+ANL  T G  EF+D TND+ I    DH++ S +EWDPTGRY
Sbjct: 489 EKKSCTHLFWSPRGQFIVMANL--TMGTFEFVDSTNDYIITASPDHFRASEVEWDPTGRY 546

Query: 179 VVTGVSSXKCKMDCGYYIWSFQGKI 253
           VVTGVSS K K D G+ +++FQG+I
Sbjct: 547 VVTGVSSWKVKEDTGFNMYTFQGRI 571



 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 42/88 (47%), Positives = 55/88 (62%)
 Frame = +1

Query: 244 GQDTRRVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELV 423
           G+  +R + + F QF WRPRPPTLLS             YY+ FE KDR+R ++ASKEL+
Sbjct: 569 GRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELL 628

Query: 424 AKRTEQMKKFTEYRESKIQEWNEQKPRR 507
            KR++  + F EYR  +I EW EQK RR
Sbjct: 629 EKRSQLRETFMEYRNKRIAEWAEQKSRR 656


>AE013599-2498|AAF57842.1|  690|Drosophila melanogaster CG4878-PA,
           isoform A protein.
          Length = 690

 Score =  107 bits (258), Expect = 1e-23
 Identities = 51/85 (60%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLD-TNDFTIMNVADHYQMSGIEWDPTGRY 178
           E+K   HLFWSP GQFIV+ANL  T G  EF+D TND+ I    DH++ S +EWDPTGRY
Sbjct: 489 EKKSCTHLFWSPRGQFIVMANL--TMGTFEFVDSTNDYIITASPDHFRASEVEWDPTGRY 546

Query: 179 VVTGVSSXKCKMDCGYYIWSFQGKI 253
           VVTGVSS K K D G+ +++FQG+I
Sbjct: 547 VVTGVSSWKVKEDTGFNMYTFQGRI 571



 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 42/88 (47%), Positives = 55/88 (62%)
 Frame = +1

Query: 244 GQDTRRVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELV 423
           G+  +R + + F QF WRPRPPTLLS             YY+ FE KDR+R ++ASKEL+
Sbjct: 569 GRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELL 628

Query: 424 AKRTEQMKKFTEYRESKIQEWNEQKPRR 507
            KR++  + F EYR  +I EW EQK RR
Sbjct: 629 EKRSQLRETFMEYRNKRIAEWAEQKSRR 656


>AY051717-1|AAK93141.1|  638|Drosophila melanogaster LD24903p
           protein.
          Length = 638

 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = +2

Query: 11  PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
           P N  +++P G  I LA  G   GA+E  D +    +        +  EW P G + VT 
Sbjct: 332 PRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTA 391

Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
            ++ + ++  G+ ++ + G +
Sbjct: 392 TTAPRLRISNGFKVYHYSGAL 412


>AE014296-3624|AAF51786.1|  638|Drosophila melanogaster CG7414-PA
           protein.
          Length = 638

 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = +2

Query: 11  PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
           P N  +++P G  I LA  G   GA+E  D +    +        +  EW P G + VT 
Sbjct: 332 PRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTA 391

Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
            ++ + ++  G+ ++ + G +
Sbjct: 392 TTAPRLRISNGFKVYHYSGAL 412


>AF367178-1|AAK31264.1|  747|Drosophila melanogaster chromatin
           assembly factor-1 p105subunit protein.
          Length = 747

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 5   RKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVV 184
           R+    L W+P+ QF+V  ++  T    +        I++    Y + G+ WDP  +Y+ 
Sbjct: 133 REDIYDLSWAPNSQFLVSGSVDNTAMLWDVHSGKSLAILDDHKGY-VQGVAWDPCNQYIA 191

Query: 185 T 187
           T
Sbjct: 192 T 192


>AE013599-1108|AAF58788.1|  747|Drosophila melanogaster CG12892-PA
           protein.
          Length = 747

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 5   RKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVV 184
           R+    L W+P+ QF+V  ++  T    +        I++    Y + G+ WDP  +Y+ 
Sbjct: 133 REDIYDLSWAPNSQFLVSGSVDNTAMLWDVHSGKSLAILDDHKGY-VQGVAWDPCNQYIA 191

Query: 185 T 187
           T
Sbjct: 192 T 192


>U07652-1|AAA20518.1|  390|Drosophila melanogaster La/SS-B protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
           FE+KD+ ++    +++V K  E ++K+  +Y + K +E+ ++  +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248


>L32988-1|AAA21776.1|  390|Drosophila melanogaster La
           ribonucleoprotein protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
           FE+KD+ ++    +++V K  E ++K+  +Y + K +E+ ++  +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248


>AY075257-1|AAL68124.1|  390|Drosophila melanogaster AT22034p
           protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
           FE+KD+ ++    +++V K  E ++K+  +Y + K +E+ ++  +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248


>AE014134-3230|AAN11073.1|  390|Drosophila melanogaster CG10922-PB,
           isoform B protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
           FE+KD+ ++    +++V K  E ++K+  +Y + K +E+ ++  +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248


>AE014134-3229|AAF53885.1|  390|Drosophila melanogaster CG10922-PA,
           isoform A protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
           FE+KD+ ++    +++V K  E ++K+  +Y + K +E+ ++  +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248


>AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-PA
            protein.
          Length = 1833

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 382  KDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQK 498
            + R+ SSK   ELV++R+    K +E  +SK+ E+ E++
Sbjct: 1339 ESRLESSKIKTELVSERSANEIKISE-MQSKLNEFEEER 1376


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,892,466
Number of Sequences: 53049
Number of extensions: 554674
Number of successful extensions: 1424
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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