Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C11f
         (408 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071154-1|AAL48776.1|  176|Drosophila melanogaster RE18415p pro...    70   1e-12
AE014297-2125|AAF55257.1|  176|Drosophila melanogaster CG5516-PA...    70   1e-12
M14954-1|AAA70221.1|  426|Drosophila melanogaster putative ORF1 ...    33   0.11 
BT021245-1|AAX33393.1| 1823|Drosophila melanogaster RE64082p pro...    30   1.0  
AF243382-1|AAF68440.1| 1548|Drosophila melanogaster cytoplasmic ...    30   1.0  
AE014296-703|AAF47799.2| 1818|Drosophila melanogaster CG10847-PB...    30   1.0  
AE014296-702|AAS64963.1| 1823|Drosophila melanogaster CG10847-PA...    30   1.0  
X17551-1|CAA35586.1|  565|Drosophila melanogaster ORF1 for putat...    29   2.4  
BT014916-1|AAT47767.1|  409|Drosophila melanogaster RE14563p pro...    29   2.4  
AJ278684-1|CAB99191.1|  488|Drosophila melanogaster gag-like pro...    29   2.4  
AF132177-1|AAD34765.1| 1231|Drosophila melanogaster unknown prot...    28   4.1  
AE013599-3813|AAF47162.1| 1231|Drosophila melanogaster CG3231-PA...    28   4.1  
BT016057-1|AAV36942.1|  961|Drosophila melanogaster LP14942p pro...    27   7.2  
AE014296-3038|AAG22572.1|  961|Drosophila melanogaster CG18811-P...    27   7.2  
AY075310-1|AAO39630.1|  145|Drosophila melanogaster AT31918p pro...    27   9.5  
AE014296-2817|AAN11746.1|  120|Drosophila melanogaster CG13029-P...    27   9.5  
AE014296-2816|AAN11745.1|  288|Drosophila melanogaster CG13029-P...    27   9.5  

>AY071154-1|AAL48776.1|  176|Drosophila melanogaster RE18415p
           protein.
          Length = 176

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 29/46 (63%), Positives = 34/46 (73%)
 Frame = +1

Query: 1   AAFPQGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKE 138
           A FP GIRCQKCL+ GHWSYECK KRK + R SRT+ + K +  KE
Sbjct: 22  ADFPNGIRCQKCLQIGHWSYECKEKRKYVHRSSRTKQLSKRMSQKE 67


>AE014297-2125|AAF55257.1|  176|Drosophila melanogaster CG5516-PA
           protein.
          Length = 176

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 29/46 (63%), Positives = 34/46 (73%)
 Frame = +1

Query: 1   AAFPQGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKE 138
           A FP GIRCQKCL+ GHWSYECK KRK + R SRT+ + K +  KE
Sbjct: 22  ADFPNGIRCQKCLQIGHWSYECKEKRKYVHRSSRTKQLSKRMSQKE 67


>M14954-1|AAA70221.1|  426|Drosophila melanogaster putative ORF1
           protein.
          Length = 426

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 10  PQGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSN 156
           P  +RC+KCL FGH +  CK   +  +  S T+  +   K   E  C N
Sbjct: 183 PLPLRCKKCLRFGHPTPICKSV-ETCINCSETKHTNDGEKCTNEKNCLN 230


>BT021245-1|AAX33393.1| 1823|Drosophila melanogaster RE64082p
           protein.
          Length = 1823

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 66  QGQTQDPSSSFTYTNHA*ESESQRRRSMQQWQLQDTQQEK 185
           Q Q Q  SSS  Y N+   S  Q+++S QQ Q Q   Q++
Sbjct: 723 QSQNQGNSSSGGYNNYRKSSPHQQQQSQQQQQSQQHHQQQ 762


>AF243382-1|AAF68440.1| 1548|Drosophila melanogaster cytoplasmic
           protein encore protein.
          Length = 1548

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 66  QGQTQDPSSSFTYTNHA*ESESQRRRSMQQWQLQDTQQEK 185
           Q Q Q  SSS  Y N+   S  Q+++S QQ Q Q   Q++
Sbjct: 574 QSQNQGNSSSGGYNNYRKSSPHQQQQSQQQQQSQQHHQQQ 613


>AE014296-703|AAF47799.2| 1818|Drosophila melanogaster CG10847-PB,
           isoform B protein.
          Length = 1818

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 66  QGQTQDPSSSFTYTNHA*ESESQRRRSMQQWQLQDTQQEK 185
           Q Q Q  SSS  Y N+   S  Q+++S QQ Q Q   Q++
Sbjct: 718 QSQNQGNSSSGGYNNYRKSSPHQQQQSQQQQQSQQHHQQQ 757


>AE014296-702|AAS64963.1| 1823|Drosophila melanogaster CG10847-PA,
           isoform A protein.
          Length = 1823

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 66  QGQTQDPSSSFTYTNHA*ESESQRRRSMQQWQLQDTQQEK 185
           Q Q Q  SSS  Y N+   S  Q+++S QQ Q Q   Q++
Sbjct: 723 QSQNQGNSSSGGYNNYRKSSPHQQQQSQQQQQSQQHHQQQ 762


>X17551-1|CAA35586.1|  565|Drosophila melanogaster ORF1 for putative
           RNA bindingprotein protein.
          Length = 565

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 19  IRCQKCLEFGHWSYECKGKRKILV--RPSRTRIMHKNLKAKEEGQCSN 156
           ++C  C E+GH    C  K   +V   P  T    KN   K   +CSN
Sbjct: 382 VQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSN 429


>BT014916-1|AAT47767.1|  409|Drosophila melanogaster RE14563p
           protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 19  IRCQKCLEFGHWSYECKGKRKILV--RPSRTRIMHKNLKAKEEGQCSN 156
           ++C  C E+GH    C  K   +V   P  T    KN   K   +CSN
Sbjct: 226 VQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSN 273


>AJ278684-1|CAB99191.1|  488|Drosophila melanogaster gag-like
           protein protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 19  IRCQKCLEFGHWSYECK 69
           IRC +CLEFGH +  CK
Sbjct: 407 IRCFRCLEFGHRAPYCK 423


>AF132177-1|AAD34765.1| 1231|Drosophila melanogaster unknown
           protein.
          Length = 1231

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  PQGIRCQKCLEFGHWSYEC 66
           P   RC KC + GHW   C
Sbjct: 148 PASYRCNKCKKSGHWIKNC 166


>AE013599-3813|AAF47162.1| 1231|Drosophila melanogaster CG3231-PA
           protein.
          Length = 1231

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  PQGIRCQKCLEFGHWSYEC 66
           P   RC KC + GHW   C
Sbjct: 148 PASYRCNKCKKSGHWIKNC 166


>BT016057-1|AAV36942.1|  961|Drosophila melanogaster LP14942p
           protein.
          Length = 961

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 72  QTQDPSSSFTYTNHA*ESESQRRRSMQQWQLQDTQQEK 185
           Q  D +S F+Y N     E Q ++ ++Q Q Q  QQ++
Sbjct: 646 QAGDVTSGFSYENAVVSYEQQIQQQLKQQQQQQQQQQQ 683


>AE014296-3038|AAG22572.1|  961|Drosophila melanogaster CG18811-PA
           protein.
          Length = 961

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 72  QTQDPSSSFTYTNHA*ESESQRRRSMQQWQLQDTQQEK 185
           Q  D +S F+Y N     E Q ++ ++Q Q Q  QQ++
Sbjct: 646 QAGDVTSGFSYENAVVSYEQQIQQQLKQQQQQQQQQQQ 683


>AY075310-1|AAO39630.1|  145|Drosophila melanogaster AT31918p
           protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 113 MIRVREGRTRILRLPLHS*LQCPNSKHFWH 24
           M+      + +  LP    + CP  KH WH
Sbjct: 101 MLACHRNSSAVTSLPKDRQIPCPEEKHLWH 130


>AE014296-2817|AAN11746.1|  120|Drosophila melanogaster CG13029-PB,
           isoform B protein.
          Length = 120

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 113 MIRVREGRTRILRLPLHS*LQCPNSKHFWH 24
           M+      + +  LP    + CP  KH WH
Sbjct: 76  MLACHRNSSAVTSLPKDRQIPCPEEKHLWH 105


>AE014296-2816|AAN11745.1|  288|Drosophila melanogaster CG13029-PC,
           isoform C protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 113 MIRVREGRTRILRLPLHS*LQCPNSKHFWH 24
           M+      + +  LP    + CP  KH WH
Sbjct: 76  MLACHRNSSAVTSLPKDRQIPCPEEKHLWH 105


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,208,100
Number of Sequences: 53049
Number of extensions: 233523
Number of successful extensions: 1317
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)