Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0015.Seq
         (449 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025816-1|ABF85716.1|  580|Drosophila melanogaster IP02907p pro...    27   8.8  
AE013599-3856|AAM68310.1|  805|Drosophila melanogaster CG4356-PB...    27   8.8  
AE013599-3855|AAF47197.1|  788|Drosophila melanogaster CG4356-PA...    27   8.8  

>BT025816-1|ABF85716.1|  580|Drosophila melanogaster IP02907p
           protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 137 ESWRRPMPRGTPNSE-IYYXXXXXXXXXXKFHGYSSEIKGFIIIKK 3
           ++WRRP    +P++E +Y             H   S IK    IKK
Sbjct: 119 DTWRRPRSESSPDAESVYMTNMVIDSGYHGMHSRKSSIKSTNTIKK 164


>AE013599-3856|AAM68310.1|  805|Drosophila melanogaster CG4356-PB,
           isoform B protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 137 ESWRRPMPRGTPNSE-IYYXXXXXXXXXXKFHGYSSEIKGFIIIKK 3
           ++WRRP    +P++E +Y             H   S IK    IKK
Sbjct: 344 DTWRRPRSESSPDAESVYMTNMVIDSGYHGMHSRKSSIKSTNTIKK 389


>AE013599-3855|AAF47197.1|  788|Drosophila melanogaster CG4356-PA,
           isoform A protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 137 ESWRRPMPRGTPNSE-IYYXXXXXXXXXXKFHGYSSEIKGFIIIKK 3
           ++WRRP    +P++E +Y             H   S IK    IKK
Sbjct: 344 DTWRRPRSESSPDAESVYMTNMVIDSGYHGMHSRKSSIKSTNTIKK 389


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,258,402
Number of Sequences: 53049
Number of extensions: 437347
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)