Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0044
         (495 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075460-1|AAL68273.1|  480|Drosophila melanogaster RE16208p pro...    30   1.5  
AE013599-3922|AAF47246.2|  478|Drosophila melanogaster CG13594-P...    30   1.5  
AF427496-1|AAL25120.1|  734|Drosophila melanogaster occludin-lik...    28   6.0  

>AY075460-1|AAL68273.1|  480|Drosophila melanogaster RE16208p
           protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 198 LQKRTKKIRYLQ--KWRKK*RGPRSSASVLGECVK*CLGDNNIGANVQWDGMAPSAGS 365
           + K+TK ++YL+  KWR     P  + ++  E        NN G N++    +  AGS
Sbjct: 231 IAKKTKFLKYLEEEKWRSNAAVPEDAGAISNEAEPSTPSGNNNGGNLKNQSNSREAGS 288


>AE013599-3922|AAF47246.2|  478|Drosophila melanogaster CG13594-PA
           protein.
          Length = 478

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 198 LQKRTKKIRYLQ--KWRKK*RGPRSSASVLGECVK*CLGDNNIGANVQWDGMAPSAGS 365
           + K+TK ++YL+  KWR     P  + ++  E        NN G N++    +  AGS
Sbjct: 229 IAKKTKFLKYLEEEKWRSNAAVPEDAGAISNEAEPSTPSGNNNGGNLKNQSNSREAGS 286


>AF427496-1|AAL25120.1|  734|Drosophila melanogaster occludin-like
           protein protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 56  LKGKRDRNRSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRLH 190
           LK K ++ R  + Q++   H+R+ N + + ++      DL ++LH
Sbjct: 278 LKSKAEKERDEMAQEMETLHERIENYQDQISLKTSQVNDLTEKLH 322


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,876,024
Number of Sequences: 53049
Number of extensions: 480321
Number of successful extensions: 1265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)