Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0001
         (578 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   174   6e-44
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   174   6e-44
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   174   6e-44
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   174   6e-44
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   174   6e-44

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  174 bits (424), Expect = 6e-44
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
           DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA
Sbjct: 78  DFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 137

Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
           IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 138 IILAKLSVVPVRRGYWGNKIGKPHT 162



 Score =  133 bits (321), Expect = 2e-31
 Identities = 60/82 (73%), Positives = 67/82 (81%)
 Frame = +3

Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
           VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP+KLL MAG++DCYTSARGSTGTLGNF   
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPRKLLTMAGIEDCYTSARGSTGTLGNFAKA 222

Query: 435 XXXXXXXXXXXLTPDLWRDIPL 500
                      LTPDLW+++PL
Sbjct: 223 TYAAIAKTYAYLTPDLWKEMPL 244


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  174 bits (424), Expect = 6e-44
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
           DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA
Sbjct: 78  DFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 137

Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
           IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 138 IILAKLSVVPVRRGYWGNKIGKPHT 162



 Score =  134 bits (324), Expect = 8e-32
 Identities = 61/82 (74%), Positives = 67/82 (81%)
 Frame = +3

Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
           VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTSARGSTGTLGNF   
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKA 222

Query: 435 XXXXXXXXXXXLTPDLWRDIPL 500
                      LTPDLW+++PL
Sbjct: 223 TYAAIAKTYAYLTPDLWKEMPL 244


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  174 bits (424), Expect = 6e-44
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
           DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA
Sbjct: 78  DFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 137

Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
           IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 138 IILAKLSVVPVRRGYWGNKIGKPHT 162



 Score =  134 bits (324), Expect = 8e-32
 Identities = 61/82 (74%), Positives = 67/82 (81%)
 Frame = +3

Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
           VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTSARGSTGTLGNF   
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKA 222

Query: 435 XXXXXXXXXXXLTPDLWRDIPL 500
                      LTPDLW+++PL
Sbjct: 223 TYAAIAKTYAYLTPDLWKEMPL 244


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  174 bits (424), Expect = 6e-44
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
           DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA
Sbjct: 78  DFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 137

Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
           IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 138 IILAKLSVVPVRRGYWGNKIGKPHT 162



 Score =  134 bits (324), Expect = 8e-32
 Identities = 61/82 (74%), Positives = 67/82 (81%)
 Frame = +3

Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
           VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTSARGSTGTLGNF   
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKA 222

Query: 435 XXXXXXXXXXXLTPDLWRDIPL 500
                      LTPDLW+++PL
Sbjct: 223 TYAAIAKTYAYLTPDLWKEMPL 244


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  174 bits (424), Expect = 6e-44
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
           DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA
Sbjct: 78  DFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 137

Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
           IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 138 IILAKLSVVPVRRGYWGNKIGKPHT 162



 Score =  134 bits (324), Expect = 8e-32
 Identities = 61/82 (74%), Positives = 67/82 (81%)
 Frame = +3

Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
           VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTSARGSTGTLGNF   
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKA 222

Query: 435 XXXXXXXXXXXLTPDLWRDIPL 500
                      LTPDLW+++PL
Sbjct: 223 TYAAIAKTYAYLTPDLWKEMPL 244


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,401,044
Number of Sequences: 53049
Number of extensions: 684962
Number of successful extensions: 1779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)