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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03f
         (637 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003497-1|AAO39501.1|  254|Drosophila melanogaster RE46560p pro...    29   4.0  
AE014297-4555|AAF57017.2|  254|Drosophila melanogaster CG1983-PA...    29   4.0  
AY084149-1|AAL89887.1|  499|Drosophila melanogaster RE29709p pro...    28   9.2  
AY061327-1|AAL28875.1|  719|Drosophila melanogaster LD24749p pro...    28   9.2  
AJ243916-1|CAB51032.1|  719|Drosophila melanogaster DOMINA prote...    28   9.2  
AJ243814-1|CAB51073.1|  719|Drosophila melanogaster DOMINA prote...    28   9.2  
AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid horm...    28   9.2  
AF264033-1|AAF91395.1|  719|Drosophila melanogaster winged-helix...    28   9.2  
AE014297-2719|AAF55707.2| 1362|Drosophila melanogaster CG4562-PA...    28   9.2  
AE014297-1143|AAF54525.1|  719|Drosophila melanogaster CG4029-PA...    28   9.2  
AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA...    28   9.2  
AE013599-2536|AAF57813.3|  499|Drosophila melanogaster CG14485-P...    28   9.2  
AE013599-852|AAF58947.2| 1290|Drosophila melanogaster CG8799-PA ...    28   9.2  
AB028890-1|BAA94598.1|  719|Drosophila melanogaster Winged-helix...    28   9.2  

>BT003497-1|AAO39501.1|  254|Drosophila melanogaster RE46560p
           protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 114 FSYSNGQADNFTTMAPFARSFCSPNSKDSDFQTVALIAVYRLDRSDTTGVTLVQ 275
           F YSNG   +F ++    RS C  +S   D   V++      D++   G T+V+
Sbjct: 188 FDYSNGPNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVR 241


>AE014297-4555|AAF57017.2|  254|Drosophila melanogaster CG1983-PA
           protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 114 FSYSNGQADNFTTMAPFARSFCSPNSKDSDFQTVALIAVYRLDRSDTTGVTLVQ 275
           F YSNG   +F ++    RS C  +S   D   V++      D++   G T+V+
Sbjct: 188 FDYSNGPNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVR 241


>AY084149-1|AAL89887.1|  499|Drosophila melanogaster RE29709p
           protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 335 SKRSVPGWSSEPVQCGGNLQCSRTTK 412
           S RS  GWSS P   GGN  CSR+ +
Sbjct: 56  SGRSCFGWSSAPEAAGGN--CSRSNR 79


>AY061327-1|AAL28875.1|  719|Drosophila melanogaster LD24749p
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
           T  AT   + +  R NS+  +  R+ L   LR  ++  VP++L   G+  G+T     V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272


>AJ243916-1|CAB51032.1|  719|Drosophila melanogaster DOMINA protein
           (WHN-homologue) protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
           T  AT   + +  R NS+  +  R+ L   LR  ++  VP++L   G+  G+T     V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272


>AJ243814-1|CAB51073.1|  719|Drosophila melanogaster DOMINA protein
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
           T  AT   + +  R NS+  +  R+ L   LR  ++  VP++L   G+  G+T     V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272


>AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid hormone
            receptor-associatedprotein TRAP220 protein.
          Length = 1475

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +2

Query: 311  RGS*SNFTSKRSVPGWSSEPVQCG 382
            RGS  N TS RS P  SSEP   G
Sbjct: 1392 RGSGGNTTSGRSTPSGSSEPALAG 1415


>AF264033-1|AAF91395.1|  719|Drosophila melanogaster winged-helix
           protein jumeaux protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
           T  AT   + +  R NS+  +  R+ L   LR  ++  VP++L   G+  G+T     V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272


>AE014297-2719|AAF55707.2| 1362|Drosophila melanogaster CG4562-PA
            protein.
          Length = 1362

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +3

Query: 351  PGGLPNRFSVEGTFNARGQRRPWSLLRA--RSNNVLF--SLILMPEPRKVAVLVQGSRAV 518
            P GL ++ S  GT  + GQR+   L RA  R N +L         +P+  A++    R  
Sbjct: 1200 PSGLQSKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDALIQTTIRNK 1259

Query: 519  FKSPELFTTGWHKLHVAVANRSV 587
            FK   + T   H+LH  + +  V
Sbjct: 1260 FKDCTVLTIA-HRLHTVMDSDKV 1281


>AE014297-1143|AAF54525.1|  719|Drosophila melanogaster CG4029-PA
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
           T  AT   + +  R NS+  +  R+ L   LR  ++  VP++L   G+  G+T     V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272


>AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA
            protein.
          Length = 1475

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +2

Query: 311  RGS*SNFTSKRSVPGWSSEPVQCG 382
            RGS  N TS RS P  SSEP   G
Sbjct: 1392 RGSGGNTTSGRSTPSGSSEPALAG 1415


>AE013599-2536|AAF57813.3|  499|Drosophila melanogaster CG14485-PA
           protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 335 SKRSVPGWSSEPVQCGGNLQCSRTTK 412
           S RS  GWSS P   GGN  CSR+ +
Sbjct: 56  SGRSCFGWSSAPEAAGGN--CSRSNR 79


>AE013599-852|AAF58947.2| 1290|Drosophila melanogaster CG8799-PA
            protein.
          Length = 1290

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
 Frame = +3

Query: 336  LKEV---FPGGLPNRFSVEGTFNARGQRRPWSLLRA--RSNNVLF--SLILMPEPRKVAV 494
            LKEV    P GL ++ S  GT  + GQR+   L RA  R N +L         +P+   +
Sbjct: 1150 LKEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGL 1209

Query: 495  LVQGSRAVFKSPELFTTGWHKLHVAVANRSVHI 593
            +    R+ F+   + T   H+LH  + +  V +
Sbjct: 1210 IQATIRSKFRDCTVLTIA-HRLHTIIDSDKVMV 1241


>AB028890-1|BAA94598.1|  719|Drosophila melanogaster Winged-helix
           nude transcriptionfactor protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
           T  AT   + +  R NS+  +  R+ L   LR  ++  VP++L   G+  G+T     V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,429,569
Number of Sequences: 53049
Number of extensions: 614813
Number of successful extensions: 1946
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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