Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B06
         (948 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22536-1|AAA28998.1|  156|Drosophila melanogaster protein ( D.me...    41   0.003
BT001653-1|AAN71408.1|  156|Drosophila melanogaster RE44350p pro...    41   0.003
AE014134-1875|AAF52941.1|  156|Drosophila melanogaster CG5271-PA...    41   0.003

>M22536-1|AAA28998.1|  156|Drosophila melanogaster protein (
           D.melanogaster ubiquitin-hybrid (UB3-D) mRNA, complete
           cds. ).
          Length = 156

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA  EDRHYCGKC+ T VF K ++K
Sbjct: 130 VFMAAHEDRHYCGKCNLTFVFSKPEEK 156


>BT001653-1|AAN71408.1|  156|Drosophila melanogaster RE44350p
           protein.
          Length = 156

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA  EDRHYCGKC+ T VF K ++K
Sbjct: 130 VFMAAHEDRHYCGKCNLTFVFSKPEEK 156


>AE014134-1875|AAF52941.1|  156|Drosophila melanogaster CG5271-PA
           protein.
          Length = 156

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 LFMAVXEDRHYCGKCHSTMVF-KDDDK 214
           +FMA  EDRHYCGKC+ T VF K ++K
Sbjct: 130 VFMAAHEDRHYCGKCNLTFVFSKPEEK 156


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,123,126
Number of Sequences: 53049
Number of extensions: 168733
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4710216690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)