Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0020
         (705 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ168462-1|AAZ81896.1| 1842|Drosophila melanogaster PDZ domain-c...    30   2.7  
AY094957-1|AAM11310.1|  272|Drosophila melanogaster SD01527p pro...    29   8.1  
AF246993-1|AAF61273.1|  272|Drosophila melanogaster phosphatidyl...    29   8.1  
AE014297-2642|AAF55650.1|  272|Drosophila melanogaster CG5269-PA...    29   8.1  

>DQ168462-1|AAZ81896.1| 1842|Drosophila melanogaster PDZ
           domain-containing proteinBBG-LP10 protein.
          Length = 1842

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 229 SNCKTGTPDIISTNKYDINMIIEHLNTKDWNQEKLIAFLDLLKKKLSDIVXMRIYHHN-C 405
           SN +T   DI     YD  M +E   TKD    + +  L L ++  SD+  +  +H N  
Sbjct: 709 SNQQTDDDDIDEVAAYDDGMHLEAEGTKDVRPVQEVTTLTLDREHESDLGTLSNHHSNIS 768

Query: 406 SYGEVITSFDWLLKLVLGSSESKTS 480
           S   +  S +     ++ SS  KTS
Sbjct: 769 SISGINASSNIPAATLISSSIKKTS 793


>AY094957-1|AAM11310.1|  272|Drosophila melanogaster SD01527p
           protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 504 YQLQERVLTSFRFAAPKNKLQEPIKASNNFPIRTIVMINP 385
           Y LQ +V    R  APK  L+   +A N +P    ++ NP
Sbjct: 67  YHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNP 106


>AF246993-1|AAF61273.1|  272|Drosophila melanogaster
           phosphatidylinositol transferprotein protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 504 YQLQERVLTSFRFAAPKNKLQEPIKASNNFPIRTIVMINP 385
           Y LQ +V    R  APK  L+   +A N +P    ++ NP
Sbjct: 67  YHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNP 106


>AE014297-2642|AAF55650.1|  272|Drosophila melanogaster CG5269-PA
           protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 504 YQLQERVLTSFRFAAPKNKLQEPIKASNNFPIRTIVMINP 385
           Y LQ +V    R  APK  L+   +A N +P    ++ NP
Sbjct: 67  YHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNP 106


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,390,833
Number of Sequences: 53049
Number of extensions: 469760
Number of successful extensions: 1055
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)