Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0019
         (854 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X88928-1|CAA61369.1| 1092|Drosophila melanogaster DNA polymerase...    30   3.5  
AY113526-1|AAM29531.1| 1092|Drosophila melanogaster RE60511p pro...    30   3.5  
AE014296-2611|AAF49555.1| 1092|Drosophila melanogaster CG5949-PA...    30   3.5  
AE014298-1623|AAF48046.1|  837|Drosophila melanogaster CG1745-PB...    30   4.7  
AY061428-1|AAL28976.1|  971|Drosophila melanogaster LD35896p pro...    29   8.1  
AE014297-2451|AAF55502.1|  971|Drosophila melanogaster CG7212-PA...    29   8.1  
AE014296-1713|AAF50220.2| 1473|Drosophila melanogaster CG16711-P...    29   8.1  

>X88928-1|CAA61369.1| 1092|Drosophila melanogaster DNA polymerase
           delta protein.
          Length = 1092

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 819 YVLNECXPQSGSSTLCXMVRISLAKNWTNFVESM 718
           + LNEC P  GS  LC      +   W+ FV  +
Sbjct: 339 FTLNECAPIIGSQVLCHDKETQMLDKWSAFVREV 372


>AY113526-1|AAM29531.1| 1092|Drosophila melanogaster RE60511p
           protein.
          Length = 1092

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 819 YVLNECXPQSGSSTLCXMVRISLAKNWTNFVESM 718
           + LNEC P  GS  LC      +   W+ FV  +
Sbjct: 339 FTLNECAPIIGSQVLCHDKETQMLDKWSAFVREV 372


>AE014296-2611|AAF49555.1| 1092|Drosophila melanogaster CG5949-PA
           protein.
          Length = 1092

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 819 YVLNECXPQSGSSTLCXMVRISLAKNWTNFVESM 718
           + LNEC P  GS  LC      +   W+ FV  +
Sbjct: 339 FTLNECAPIIGSQVLCHDKETQMLDKWSAFVREV 372


>AE014298-1623|AAF48046.1|  837|Drosophila melanogaster CG1745-PB,
           isoform B protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 388 EKRVDITADIILSGDKKNIAHGALFLQDNLVKS 486
           EK  D   +++L  D+KN+   A  + DN VKS
Sbjct: 600 EKSEDAREEVLLDEDEKNLEENAAEISDNAVKS 632


>AY061428-1|AAL28976.1|  971|Drosophila melanogaster LD35896p
           protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 370 VGHLVPEKRVDITADIILSGDKKNIAHGALFLQ 468
           VG+L P  +VD  ADI+L+ ++K  A  A++++
Sbjct: 885 VGYLTPRSQVDKFADILLAMNRKYAAEMAVWMK 917


>AE014297-2451|AAF55502.1|  971|Drosophila melanogaster CG7212-PA
           protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 370 VGHLVPEKRVDITADIILSGDKKNIAHGALFLQ 468
           VG+L P  +VD  ADI+L+ ++K  A  A++++
Sbjct: 885 VGYLTPRSQVDKFADILLAMNRKYAAEMAVWMK 917


>AE014296-1713|AAF50220.2| 1473|Drosophila melanogaster CG16711-PA,
            isoform A protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 21/93 (22%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = +2

Query: 410  LISSYLVTRKISPTGHFSCKIT-WSKATTDYRKKLQLFLERSEKRPRHIS*AHQREKV-K 583
            L++SYL  +K S  G++  + + W +    + ++ Q    + +++ +H    HQ+++  +
Sbjct: 1319 LLNSYLY-QKDSDAGNYMAEQSYWQQHQQHHHQQQQQQQHQQQQQQQHQQQQHQQQQQHQ 1377

Query: 584  RPAXKFQRYPKKQLLTSRKSMKTXAENGASFTR 682
            +   + Q+  +KQL   ++  +  A NG+S  R
Sbjct: 1378 QQQHQQQQQQQKQLQQQQQQHQWSANNGSSNQR 1410


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,760,332
Number of Sequences: 53049
Number of extensions: 683820
Number of successful extensions: 1471
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)