Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0002
         (406 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061232-1|AAL28780.1|  382|Drosophila melanogaster LD17530p pro...    64   9e-11
AF145311-1|AAF08392.1|  382|Drosophila melanogaster 26S proteaso...    64   9e-11
AE014297-3373|AAF56174.1|  382|Drosophila melanogaster CG10230-P...    64   9e-11
AE014297-3372|AAF56173.1|  382|Drosophila melanogaster CG10230-P...    64   9e-11
BT024259-1|ABC86321.1|  119|Drosophila melanogaster IP15827p pro...    31   0.58 
AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p pro...    31   0.77 
AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA...    31   0.77 
AY084183-1|AAL89921.1|  315|Drosophila melanogaster RE62247p pro...    28   4.1  

>AY061232-1|AAL28780.1|  382|Drosophila melanogaster LD17530p
           protein.
          Length = 382

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           KI++LCLMEM F +S+ +R +SF +IA+E ++P  EVELLIMKALA  L+
Sbjct: 276 KISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLV 325


>AF145311-1|AAF08392.1|  382|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p39A protein.
          Length = 382

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           KI++LCLMEM F +S+ +R +SF +IA+E ++P  EVELLIMKALA  L+
Sbjct: 276 KISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLV 325


>AE014297-3373|AAF56174.1|  382|Drosophila melanogaster CG10230-PB,
           isoform B protein.
          Length = 382

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           KI++LCLMEM F +S+ +R +SF +IA+E ++P  EVELLIMKALA  L+
Sbjct: 276 KISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLV 325


>AE014297-3372|AAF56173.1|  382|Drosophila melanogaster CG10230-PA,
           isoform A protein.
          Length = 382

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           KI++LCLMEM F +S+ +R +SF +IA+E ++P  EVELLIMKALA  L+
Sbjct: 276 KISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLV 325


>BT024259-1|ABC86321.1|  119|Drosophila melanogaster IP15827p
           protein.
          Length = 119

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -3

Query: 401 IAILCLMEMAFNKSSSQRKLSFEEIAREARI---PLDEVELLIMKALAEKLI 255
           I +L L+          ++ + EE++R A +   P  EVELLIMKALA  L+
Sbjct: 11  IILLALVAFCHAAPLDVKESTSEELSRPASLALSPAKEVELLIMKALALDLV 62


>AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p
           protein.
          Length = 387

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           K+ +L  M++A     S  +++FE + +E +I  DEVE  +++ L  KL+
Sbjct: 277 KMRLLTFMQLA----ESSPEMTFETLTKELQINEDEVEPFVIEVLKTKLV 322


>AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA
           protein.
          Length = 387

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           K+ +L  M++A     S  +++FE + +E +I  DEVE  +++ L  KL+
Sbjct: 277 KMRLLTFMQLA----ESSPEMTFETLTKELQINEDEVEPFVIEVLKTKLV 322


>AY084183-1|AAL89921.1|  315|Drosophila melanogaster RE62247p
           protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 170 RQRGWTRGERRSPRPPTCWLPCSPTSSSLEDSF 72
           R++  T  +RRSP PPT  +P +P     E SF
Sbjct: 216 RRQQRTLEQRRSPVPPTAGIPPTPDWGQREVSF 248


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,153
Number of Sequences: 53049
Number of extensions: 216431
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1191504915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)