Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0082
         (658 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like p...    39   0.005
AE014297-1373|AAF54695.1| 1090|Drosophila melanogaster CG17342-P...    29   7.3  
AE014297-1372|AAF54694.1| 1142|Drosophila melanogaster CG17342-P...    29   7.3  
AE014296-3256|AAF49087.1|  720|Drosophila melanogaster CG17732-P...    29   7.3  

>X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like
          protein protein.
          Length = 110

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +1

Query: 22 AVAAALELVDPPGCRNS 72
          AVAAALELVDPPGCRNS
Sbjct: 5  AVAAALELVDPPGCRNS 21


>AE014297-1373|AAF54695.1| 1090|Drosophila melanogaster CG17342-PB,
            isoform B protein.
          Length = 1090

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 426  NRKENYQNQFKHSRGGARYPIRPIVSRIQ 512
            N++ NY   F HS G A Y I P+   +Q
Sbjct: 938  NQQRNYLGSFSHSGGAAGYKIAPMPPPMQ 966


>AE014297-1372|AAF54694.1| 1142|Drosophila melanogaster CG17342-PA,
            isoform A protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 426  NRKENYQNQFKHSRGGARYPIRPIVSRIQ 512
            N++ NY   F HS G A Y I P+   +Q
Sbjct: 990  NQQRNYLGSFSHSGGAAGYKIAPMPPPMQ 1018


>AE014296-3256|AAF49087.1|  720|Drosophila melanogaster CG17732-PA
           protein.
          Length = 720

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 590 ECAARRLSWVTPGFSQSRRCKTTASELYTTHYRAN-WVPGPPSRML 456
           + ++R  + V+P   + RRC+T  SEL T  Y      P PP+ ++
Sbjct: 636 QSSSRTCTQVSPSARKVRRCRTRISELGTDPYPCQIRTPLPPASLI 681


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,376,836
Number of Sequences: 53049
Number of extensions: 654167
Number of successful extensions: 1495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)