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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0033
         (681 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029141-1|ABJ17074.1|   59|Drosophila melanogaster RE25914p pro...    32   0.83 
AE014134-2167|AAF53171.1| 1354|Drosophila melanogaster CG17211-P...    31   1.5  
X66270-1|CAA46985.1|  497|Drosophila melanogaster ems W13 protein.     31   1.9  
X51653-1|CAA35965.1|  494|Drosophila melanogaster empty spiracle...    31   1.9  
M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.         31   1.9  
M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein ( D.me...    31   1.9  
BT021310-1|AAX33458.1|  494|Drosophila melanogaster RE15812p pro...    31   1.9  
AE014297-1771|AAF54999.1|  494|Drosophila melanogaster CG2988-PA...    31   1.9  
BT025148-1|ABE73318.1|  270|Drosophila melanogaster IP04354p pro...    30   2.5  
BT022325-1|AAY54741.1|  131|Drosophila melanogaster IP04544p pro...    30   3.4  
AE014297-2857|AAF55804.1|  136|Drosophila melanogaster CG15690-P...    30   3.4  
AE014296-1713|AAF50220.2| 1473|Drosophila melanogaster CG16711-P...    29   4.5  
BT012663-1|AAT08469.1| 1057|Drosophila melanogaster RE66582p pro...    29   5.9  
AE014296-1456|AAF50415.2| 1039|Drosophila melanogaster CG7015-PA...    29   5.9  
BT022835-1|AAY55251.1|  132|Drosophila melanogaster IP07555p pro...    29   7.8  
BT022783-1|AAY55199.1|  142|Drosophila melanogaster IP07355p pro...    29   7.8  
BT022733-1|AAY55149.1|  131|Drosophila melanogaster IP07255p pro...    29   7.8  
BT022200-1|AAY51594.1|  751|Drosophila melanogaster IP01101p pro...    29   7.8  
AF273708-1|AAL35411.1|  118|Drosophila melanogaster PFTAIRE-inte...    29   7.8  
AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC...    29   7.8  
AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB...    29   7.8  
AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA...    29   7.8  
AE014297-3819|AAF56481.1|  148|Drosophila melanogaster CG5079-PA...    29   7.8  
AE014297-475|AAF54113.3|  118|Drosophila melanogaster CG31483-PA...    29   7.8  

>BT029141-1|ABJ17074.1|   59|Drosophila melanogaster RE25914p
           protein.
          Length = 59

 Score = 31.9 bits (69), Expect = 0.83
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 310 CCGCCPYTARCETDCCAC 363
           CC CCP   +C   CC C
Sbjct: 39  CCPCCPCCCQCGECCCCC 56


>AE014134-2167|AAF53171.1| 1354|Drosophila melanogaster CG17211-PA
           protein.
          Length = 1354

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 610 ISSPKISTAKMSTTKMSANKMSATKIAATKMSATKMP 500
           I++PK +T K STTK +  K S+ K A    S T+ P
Sbjct: 703 ITTPKPTTPKPSTTKTTTPKSSSAKPALPPKSTTQRP 739


>X66270-1|CAA46985.1|  497|Drosophila melanogaster ems W13 protein.
          Length = 497

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 218 EQPGVAIASERDVQRA*PAVRVPAIRVPTIHVRHTRAPDKEPQTPLNESRPVLLMVAQH 42
           EQP +A++ +R+   A PA+         I   HT      PQ+    S P LL+ + H
Sbjct: 172 EQPQMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPH 230


>X51653-1|CAA35965.1|  494|Drosophila melanogaster empty spiracles
           homeotic protein protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 218 EQPGVAIASERDVQRA*PAVRVPAIRVPTIHVRHTRAPDKEPQTPLNESRPVLLMVAQH 42
           EQP +A++ +R+   A PA+         I   HT      PQ+    S P LL+ + H
Sbjct: 169 EQPQMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPH 227


>M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.
          Length = 2483

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 236  EQHAPMEQPGVAIASERDVQRA*PAVRVPAIRVPTIHVRHTRAPD--KEPQTPLNESRPV 63
            E+ +P+E+  V+   E+  Q   PA  VPA    T   + T +P   +E +  ++  RP+
Sbjct: 2402 EEQSPLEEVTVSKPGEQPAQPTIPASPVPAETSSTSSAKSTSSPSLCQEEEDAVDPERPL 2461

Query: 62   LLMVAQHDCCKLQR 21
                  H   ++ R
Sbjct: 2462 NWPPRSHQAMRMAR 2475


>M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein (
            D.melanogaster pecanexgene, exons 1 (partial) and 2. ).
          Length = 1938

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 236  EQHAPMEQPGVAIASERDVQRA*PAVRVPAIRVPTIHVRHTRAPD--KEPQTPLNESRPV 63
            E+ +P+E+  V+   E+  Q   PA  VPA    T   + T +P   +E +  ++  RP+
Sbjct: 1857 EEQSPLEEVTVSKPGEQPAQPTIPASPVPAETSSTSSAKSTSSPSLCQEEEDAVDPERPL 1916

Query: 62   LLMVAQHDCCKLQR 21
                  H   ++ R
Sbjct: 1917 NWPPRSHQAMRMAR 1930


>BT021310-1|AAX33458.1|  494|Drosophila melanogaster RE15812p
           protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 218 EQPGVAIASERDVQRA*PAVRVPAIRVPTIHVRHTRAPDKEPQTPLNESRPVLLMVAQH 42
           EQP +A++ +R+   A PA+         I   HT      PQ+    S P LL+ + H
Sbjct: 169 EQPQMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPH 227


>AE014297-1771|AAF54999.1|  494|Drosophila melanogaster CG2988-PA
           protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 218 EQPGVAIASERDVQRA*PAVRVPAIRVPTIHVRHTRAPDKEPQTPLNESRPVLLMVAQH 42
           EQP +A++ +R+   A PA+         I   HT      PQ+    S P LL+ + H
Sbjct: 169 EQPQMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPH 227


>BT025148-1|ABE73318.1|  270|Drosophila melanogaster IP04354p
           protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 307 SCCGCCPYTARCETDCCACYTGC 375
           SCC CC Y   C   CC C + C
Sbjct: 7   SCCCCC-YCCCCTCCCCCCCSCC 28


>BT022325-1|AAY54741.1|  131|Drosophila melanogaster IP04544p
           protein.
          Length = 131

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 527 HQDVRHQDARRQDVQLQNIHRQ-DIHHQGFQHQ 432
           HQ  +HQ   +Q +Q Q  HRQ  +H Q  Q Q
Sbjct: 24  HQQQQHQQTHQQHLQQQYHHRQHSLHQQHLQRQ 56


>AE014297-2857|AAF55804.1|  136|Drosophila melanogaster CG15690-PA
           protein.
          Length = 136

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 527 HQDVRHQDARRQDVQLQNIHRQ-DIHHQGFQHQ 432
           HQ  +HQ   +Q +Q Q  HRQ  +H Q  Q Q
Sbjct: 29  HQQQQHQQTHQQHLQQQYHHRQHSLHQQHLQRQ 61


>AE014296-1713|AAF50220.2| 1473|Drosophila melanogaster CG16711-PA,
            isoform A protein.
          Length = 1473

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 530  RHQDVRHQDARRQD--VQLQNIHRQDIHHQGFQHQDVQRRGVRDWRRKICLEEE 375
            +HQ   HQ  ++Q    Q Q  H+Q  H Q  QHQ  Q +  +  ++++  +++
Sbjct: 1343 QHQQHHHQQQQQQQHQQQQQQQHQQQQHQQQQQHQQQQHQQQQQQQKQLQQQQQ 1396


>BT012663-1|AAT08469.1| 1057|Drosophila melanogaster RE66582p
           protein.
          Length = 1057

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 530 RHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRR 417
           +HQ  +H   ++Q  Q Q  H+Q  H Q  QHQ  Q++
Sbjct: 86  QHQQ-QHMQQQQQQQQHQQQHQQQQHQQQQQHQQQQQQ 122


>AE014296-1456|AAF50415.2| 1039|Drosophila melanogaster CG7015-PA
           protein.
          Length = 1039

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 530 RHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRR 417
           +HQ  +H   ++Q  Q Q  H+Q  H Q  QHQ  Q++
Sbjct: 86  QHQQ-QHMQQQQQQQQHQQQHQQQQHQQQQQHQQQQQQ 122


>BT022835-1|AAY55251.1|  132|Drosophila melanogaster IP07555p
           protein.
          Length = 132

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 524 QDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
           Q  +H+  +++  Q Q   +Q   H+G  HQ+VQ
Sbjct: 71  QQQQHEQQQQEQQQQQEQQQQQQQHEGASHQEVQ 104


>BT022783-1|AAY55199.1|  142|Drosophila melanogaster IP07355p
           protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 524 QDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
           Q  +H+  +++  Q Q   +Q   H+G  HQ+VQ
Sbjct: 71  QQQQHEQQQQEQQQQQEQQQQQQQHEGASHQEVQ 104


>BT022733-1|AAY55149.1|  131|Drosophila melanogaster IP07255p
           protein.
          Length = 131

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 524 QDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
           Q  +H+  +++  Q Q   +Q   H+G  HQ+VQ
Sbjct: 71  QQQQHEQQQQEQQQQQEQQQQQQQHEGASHQEVQ 104


>BT022200-1|AAY51594.1|  751|Drosophila melanogaster IP01101p
           protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 530 RHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQR 420
           R Q  +HQ  ++Q  Q Q  H+Q  H Q +Q Q  Q+
Sbjct: 309 RQQQHQHQQQQQQQQQQQQQHQQQ-HQQQYQQQHYQQ 344


>AF273708-1|AAL35411.1|  118|Drosophila melanogaster
           PFTAIRE-interacting factor 2 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +1

Query: 310 CCG-CC-PYTARCETDCCACYTGC 375
           CC  CC P    C T CC C T C
Sbjct: 53  CCSPCCTPCCTPCCTPCCKCCTPC 76


>AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC,
           isoform C protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 530 RHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRR 417
           +HQ  + Q  ++Q  Q  N+H Q  HH   Q Q  Q++
Sbjct: 192 QHQSHQQQQQQQQQDQRTNLHLQIHHHHQQQQQQQQQQ 229


>AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB,
           isoform B protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 530 RHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRR 417
           +HQ  + Q  ++Q  Q  N+H Q  HH   Q Q  Q++
Sbjct: 192 QHQSHQQQQQQQQQDQRTNLHLQIHHHHQQQQQQQQQQ 229


>AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA,
           isoform A protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 530 RHQDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQRR 417
           +HQ  + Q  ++Q  Q  N+H Q  HH   Q Q  Q++
Sbjct: 192 QHQSHQQQQQQQQQDQRTNLHLQIHHHHQQQQQQQQQQ 229


>AE014297-3819|AAF56481.1|  148|Drosophila melanogaster CG5079-PA
           protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 524 QDVRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQ 423
           Q  +H+  +++  Q Q   +Q   H+G  HQ+VQ
Sbjct: 71  QQQQHEQQQQEQQQQQEQQQQQQQHEGASHQEVQ 104


>AE014297-475|AAF54113.3|  118|Drosophila melanogaster CG31483-PA
           protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +1

Query: 310 CCG-CC-PYTARCETDCCACYTGC 375
           CC  CC P    C T CC C T C
Sbjct: 53  CCSPCCTPCCTPCCTPCCKCCTPC 76


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,162,142
Number of Sequences: 53049
Number of extensions: 364631
Number of successful extensions: 2187
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2113
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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