Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0003
         (317 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025075-1|ABE73246.1|  676|Drosophila melanogaster IP15253p pro...    33   0.10 
AY044243-1|AAK85150.1|  664|Drosophila melanogaster forkhead pro...    33   0.10 
AE014296-1175|AAF50625.2|  676|Drosophila melanogaster CG18647-P...    33   0.10 
AF292388-1|AAK97051.1|  676|Drosophila melanogaster biniou protein.    31   0.24 
X14569-1|CAA32707.1|  490|Drosophila melanogaster protein ( Dros...    30   0.74 
X12506-1|CAA31024.1|  490|Drosophila melanogaster twist protein ...    30   0.74 
BT025192-1|ABF17883.1|  490|Drosophila melanogaster FI01303p pro...    30   0.74 
AY118454-1|AAM49823.1|  489|Drosophila melanogaster AT17310p pro...    30   0.74 
AY075213-1|AAL68080.1|  489|Drosophila melanogaster AT15089p pro...    30   0.74 
AE013599-3525|ABC66041.1|  490|Drosophila melanogaster CG2956-PB...    30   0.74 
AE013599-3524|AAF46941.1|  490|Drosophila melanogaster CG2956-PA...    30   0.74 
AY119552-1|AAM50206.1|  321|Drosophila melanogaster GH27568p pro...    27   5.2  
AE014298-2011|AAF48353.2|  321|Drosophila melanogaster CG32597-P...    27   5.2  
BT003656-1|AAO39660.1|  677|Drosophila melanogaster AT01533p pro...    27   6.9  
AY122164-1|AAM52676.1|  570|Drosophila melanogaster LD23744p pro...    27   6.9  
AY069238-1|AAL39383.1|  503|Drosophila melanogaster GH28769p pro...    27   6.9  
AE014296-3574|AAF51745.1|  564|Drosophila melanogaster CG7173-PA...    27   6.9  
AE014296-1401|AAF50464.1|  503|Drosophila melanogaster CG8006-PA...    27   6.9  
AE014134-1991|AAF53037.2|  677|Drosophila melanogaster CG33129-P...    27   6.9  
X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein ...    26   9.1  
X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein ...    26   9.1  
AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-P...    26   9.1  

>BT025075-1|ABE73246.1|  676|Drosophila melanogaster IP15253p
           protein.
          Length = 676

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +3

Query: 114 SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGYKSM 293
           SP+   SN   G   +N  S + SPAK +NGS  S PS+   E     G+ + G G  S 
Sbjct: 234 SPSQVISNAH-GMPVLNYSSSSSSPAKSLNGSESSPPSQNHLENKVS-GSAVVGTGGSSQ 291

Query: 294 NGQMNT 311
               +T
Sbjct: 292 QDAPST 297


>AY044243-1|AAK85150.1|  664|Drosophila melanogaster forkhead
           protein FoxF protein.
          Length = 664

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +3

Query: 114 SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGYKSM 293
           SP+   SN   G   +N  S + SPAK +NGS  S PS+   E     G+ + G G  S 
Sbjct: 222 SPSQVISNAH-GMPVLNYSSSSSSPAKSLNGSESSPPSQNHLENKVS-GSAVVGTGGSSQ 279

Query: 294 NGQMNT 311
               +T
Sbjct: 280 QDAPST 285


>AE014296-1175|AAF50625.2|  676|Drosophila melanogaster CG18647-PA
           protein.
          Length = 676

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +3

Query: 114 SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGYKSM 293
           SP+   SN   G   +N  S + SPAK +NGS  S PS+   E     G+ + G G  S 
Sbjct: 234 SPSQVISNAH-GMPVLNYSSSSSSPAKSLNGSESSPPSQNHLENKVS-GSAVVGTGGSSQ 291

Query: 294 NGQMNT 311
               +T
Sbjct: 292 QDAPST 297


>AF292388-1|AAK97051.1|  676|Drosophila melanogaster biniou protein.
          Length = 676

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +3

Query: 114 SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGYKSM 293
           SP+   SN   G   +N  S + SPAK +NGS  S PS+   +     G+ + G G  S 
Sbjct: 234 SPSQVISNAH-GMPVLNYSSSSSSPAKSLNGSESSPPSQNHLDNKVS-GSAVVGTGGSSQ 291

Query: 294 NGQMNT 311
               +T
Sbjct: 292 QDAPST 297


>X14569-1|CAA32707.1|  490|Drosophila melanogaster protein (
           Drosophila melanogastertwist mRNA. ).
          Length = 490

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 HSPAKMMNGSAYSTPSRGEREPAEH 254
           + PA  +NGSAYS+  R + E A H
Sbjct: 277 YEPANSLNGSAYSSSDRDDMEYARH 301


>X12506-1|CAA31024.1|  490|Drosophila melanogaster twist protein
           protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 HSPAKMMNGSAYSTPSRGEREPAEH 254
           + PA  +NGSAYS+  R + E A H
Sbjct: 277 YEPANSLNGSAYSSSDRDDMEYARH 301


>BT025192-1|ABF17883.1|  490|Drosophila melanogaster FI01303p
           protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 HSPAKMMNGSAYSTPSRGEREPAEH 254
           + PA  +NGSAYS+  R + E A H
Sbjct: 277 YEPANSLNGSAYSSSDRDDMEYARH 301


>AY118454-1|AAM49823.1|  489|Drosophila melanogaster AT17310p
           protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 HSPAKMMNGSAYSTPSRGEREPAEH 254
           + PA  +NGSAYS+  R + E A H
Sbjct: 276 YEPANSLNGSAYSSSDRDDMEYARH 300


>AY075213-1|AAL68080.1|  489|Drosophila melanogaster AT15089p
           protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 HSPAKMMNGSAYSTPSRGEREPAEH 254
           + PA  +NGSAYS+  R + E A H
Sbjct: 276 YEPANSLNGSAYSSSDRDDMEYARH 300


>AE013599-3525|ABC66041.1|  490|Drosophila melanogaster CG2956-PB,
           isoform B protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 HSPAKMMNGSAYSTPSRGEREPAEH 254
           + PA  +NGSAYS+  R + E A H
Sbjct: 277 YEPANSLNGSAYSSSDRDDMEYARH 301


>AE013599-3524|AAF46941.1|  490|Drosophila melanogaster CG2956-PA,
           isoform A protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 HSPAKMMNGSAYSTPSRGEREPAEH 254
           + PA  +NGSAYS+  R + E A H
Sbjct: 277 YEPANSLNGSAYSSSDRDDMEYARH 301


>AY119552-1|AAM50206.1|  321|Drosophila melanogaster GH27568p
           protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 132 SNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGYKSM--NGQM 305
           S++++   + +   P   PA   + SA S+P+     P +   NP TG  ++ +  +GQ 
Sbjct: 9   SSLKWWPLQGHNNQPVAPPASGYSQSAPSSPTSNWPPPLQQHQNPTTGTAHRLLPPSGQK 68

Query: 306 N 308
           N
Sbjct: 69  N 69


>AE014298-2011|AAF48353.2|  321|Drosophila melanogaster CG32597-PA
           protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 132 SNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGYKSM--NGQM 305
           S++++   + +   P   PA   + SA S+P+     P +   NP TG  ++ +  +GQ 
Sbjct: 9   SSLKWWPLQGHNNQPVAPPASGYSQSAPSSPTSNWPPPLQQHQNPTTGTAHRLLPPSGQK 68

Query: 306 N 308
           N
Sbjct: 69  N 69


>BT003656-1|AAO39660.1|  677|Drosophila melanogaster AT01533p
           protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 117 PTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAE 251
           PT    N+ FG S  N  S +HSPAK  + S+ S+ S+  + P +
Sbjct: 42  PTQRYRNL-FGSSN-NNNSKSHSPAK--SSSSASSSSKANKSPVK 82


>AY122164-1|AAM52676.1|  570|Drosophila melanogaster LD23744p
           protein.
          Length = 570

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 108 H*SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAE 251
           H S TP     +F + +   GS  ++ A   N   Y T ++  REPA+
Sbjct: 419 HKSFTPEPLRFEFTEQDAIRGSMKYTQAPQANQYYYETVAQAPREPAK 466


>AY069238-1|AAL39383.1|  503|Drosophila melanogaster GH28769p
           protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 104 KRVHCSLPVRKVSSECHADVSV 39
           K++H  +P  + S++CH+ + V
Sbjct: 274 KKIHKDVPAERASAQCHSPIGV 295


>AE014296-3574|AAF51745.1|  564|Drosophila melanogaster CG7173-PA
           protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 108 H*SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAE 251
           H S TP     +F + +   GS  ++ A   N   Y T ++  REPA+
Sbjct: 413 HKSFTPEPLRFEFTEQDAIRGSMKYTQAPQANQYYYETVAQAPREPAK 460


>AE014296-1401|AAF50464.1|  503|Drosophila melanogaster CG8006-PA
           protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 104 KRVHCSLPVRKVSSECHADVSV 39
           K++H  +P  + S++CH+ + V
Sbjct: 274 KKIHKDVPAERASAQCHSPIGV 295


>AE014134-1991|AAF53037.2|  677|Drosophila melanogaster CG33129-PE,
           isoform E protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 117 PTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAE 251
           PT    N+ FG S  N  S +HSPAK  + S+ S+ S+  + P +
Sbjct: 42  PTQRYRNL-FGSSN-NNNSKSHSPAK--SSSSASSSSKANKSPVK 82


>X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein
           protein.
          Length = 1332

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 158 NERRKSYALSRQDDERKRLFDTQSR*EGASRTLRQPNH 271
           N    SYALS +        D +    GAS+T+R P H
Sbjct: 611 NNEDLSYALSEEHSSSNEKLDKKP---GASKTMRPPEH 645


>X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein
           protein.
          Length = 1332

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 158 NERRKSYALSRQDDERKRLFDTQSR*EGASRTLRQPNH 271
           N    SYALS +        D +    GAS+T+R P H
Sbjct: 611 NNEDLSYALSEEHSSSNEKLDKKP---GASKTMRPPEH 645


>AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-PA
           protein.
          Length = 1332

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 158 NERRKSYALSRQDDERKRLFDTQSR*EGASRTLRQPNH 271
           N    SYALS +        D +    GAS+T+R P H
Sbjct: 611 NNEDLSYALSEEHSSSNEKLDKKP---GASKTMRPPEH 645


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,764
Number of Sequences: 53049
Number of extensions: 353868
Number of successful extensions: 1198
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 652945002
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)