Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0020
         (800 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118423-1|AAM48452.1|  263|Drosophila melanogaster RH04014p pro...    30   4.2  
AY051568-1|AAK92992.1|  263|Drosophila melanogaster GH21518p pro...    30   4.2  
AE014297-2841|AAF55795.1|  263|Drosophila melanogaster CG4000-PA...    30   4.2  

>AY118423-1|AAM48452.1|  263|Drosophila melanogaster RH04014p
           protein.
          Length = 263

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 541 EDDGQYXPPQGEDDGLYRPE 600
           EDDG Y PP   +DG ++P+
Sbjct: 52  EDDGSYKPPSPPEDGSWQPQ 71


>AY051568-1|AAK92992.1|  263|Drosophila melanogaster GH21518p
           protein.
          Length = 263

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 541 EDDGQYXPPQGEDDGLYRPE 600
           EDDG Y PP   +DG ++P+
Sbjct: 52  EDDGSYKPPSPPEDGSWQPQ 71


>AE014297-2841|AAF55795.1|  263|Drosophila melanogaster CG4000-PA
           protein.
          Length = 263

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 541 EDDGQYXPPQGEDDGLYRPE 600
           EDDG Y PP   +DG ++P+
Sbjct: 52  EDDGSYKPPSPPEDGSWQPQ 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,533,900
Number of Sequences: 53049
Number of extensions: 470588
Number of successful extensions: 960
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)