Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0019
         (800 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060873-1|AAL28421.1|  321|Drosophila melanogaster GM03782p pro...   260   2e-69
AM231688-1|CAJ77751.1|  321|Drosophila melanogaster GDP-4-keto-6...   260   2e-69
AE013599-3498|AAF46924.1|  321|Drosophila melanogaster CG3495-PA...   260   2e-69
AY119148-1|AAM51008.1|  321|Drosophila melanogaster RE55674p pro...   256   3e-68
AY058582-1|AAL13811.1|  350|Drosophila melanogaster LD27852p pro...    38   0.016
AE014296-117|AAF47398.1|  350|Drosophila melanogaster CG12030-PA...    38   0.016
AE014296-3568|AAS65090.1|  428|Drosophila melanogaster CG33289-P...    30   4.2  
AY119590-1|AAM50244.1|  506|Drosophila melanogaster LD16320p pro...    29   7.4  
AE013599-2264|AAF58006.1|  506|Drosophila melanogaster CG7989-PA...    29   7.4  

>AY060873-1|AAL28421.1|  321|Drosophila melanogaster GM03782p
           protein.
          Length = 321

 Score =  260 bits (636), Expect = 2e-69
 Identities = 112/162 (69%), Positives = 133/162 (82%)
 Frame = +2

Query: 188 DSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSI 367
           + E W F+GSKD DL +   T+ALFA+ KPTHVIHLAAMVGGLFHNM +NLDF R N+ I
Sbjct: 27  EDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHLAAMVGGLFHNMNNNLDFLRNNLLI 86

Query: 368 NDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVL 547
           NDN+LQ  H+    KVVSCLSTCIFPDKT+YPIDETMVHNGPPH SN+GYSYAKR+IDV 
Sbjct: 87  NDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNYGYSYAKRLIDVQ 146

Query: 548 NRGYNESYGCMFTSVIPCNVFGPHDNFSLKSSHVIPALIRRM 673
           N  Y++ YG ++TSVIPCN+FGPHDN++ + SHVIP +I RM
Sbjct: 147 NHAYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRM 188



 Score = 37.1 bits (82), Expect = 0.028
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 715 WGSGKPLRQFIYSLXLGELFIW 780
           +GSG PLRQF+YS  L EL IW
Sbjct: 208 FGSGMPLRQFVYSRDLAELMIW 229


>AM231688-1|CAJ77751.1|  321|Drosophila melanogaster
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 321

 Score =  260 bits (636), Expect = 2e-69
 Identities = 112/162 (69%), Positives = 133/162 (82%)
 Frame = +2

Query: 188 DSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSI 367
           + E W F+GSKD DL +   T+ALFA+ KPTHVIHLAAMVGGLFHNM +NLDF R N+ I
Sbjct: 27  EDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHLAAMVGGLFHNMNNNLDFLRNNLLI 86

Query: 368 NDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVL 547
           NDN+LQ  H+    KVVSCLSTCIFPDKT+YPIDETMVHNGPPH SN+GYSYAKR+IDV 
Sbjct: 87  NDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNYGYSYAKRLIDVQ 146

Query: 548 NRGYNESYGCMFTSVIPCNVFGPHDNFSLKSSHVIPALIRRM 673
           N  Y++ YG ++TSVIPCN+FGPHDN++ + SHVIP +I RM
Sbjct: 147 NHAYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRM 188



 Score = 37.1 bits (82), Expect = 0.028
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 715 WGSGKPLRQFIYSLXLGELFIW 780
           +GSG PLRQF+YS  L EL IW
Sbjct: 208 FGSGMPLRQFVYSRDLAELMIW 229


>AE013599-3498|AAF46924.1|  321|Drosophila melanogaster CG3495-PA
           protein.
          Length = 321

 Score =  260 bits (636), Expect = 2e-69
 Identities = 112/162 (69%), Positives = 133/162 (82%)
 Frame = +2

Query: 188 DSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSI 367
           + E W F+GSKD DL +   T+ALFA+ KPTHVIHLAAMVGGLFHNM +NLDF R N+ I
Sbjct: 27  EDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHLAAMVGGLFHNMNNNLDFLRNNLLI 86

Query: 368 NDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVL 547
           NDN+LQ  H+    KVVSCLSTCIFPDKT+YPIDETMVHNGPPH SN+GYSYAKR+IDV 
Sbjct: 87  NDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNYGYSYAKRLIDVQ 146

Query: 548 NRGYNESYGCMFTSVIPCNVFGPHDNFSLKSSHVIPALIRRM 673
           N  Y++ YG ++TSVIPCN+FGPHDN++ + SHVIP +I RM
Sbjct: 147 NHAYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRM 188



 Score = 37.1 bits (82), Expect = 0.028
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 715 WGSGKPLRQFIYSLXLGELFIW 780
           +GSG PLRQF+YS  L EL IW
Sbjct: 208 FGSGMPLRQFVYSRDLAELMIW 229


>AY119148-1|AAM51008.1|  321|Drosophila melanogaster RE55674p
           protein.
          Length = 321

 Score =  256 bits (627), Expect = 3e-68
 Identities = 111/162 (68%), Positives = 132/162 (81%)
 Frame = +2

Query: 188 DSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSI 367
           + E W F+GSKD DL +   T+ALFA+ KPTHVIHLAAMVGGLFHNM +NLDF R N+ I
Sbjct: 27  EDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHLAAMVGGLFHNMNNNLDFLRNNLLI 86

Query: 368 NDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVL 547
           NDN+LQ  H+    KVVSCLSTCIF DKT+YPIDETMVHNGPPH SN+GYSYAKR+IDV 
Sbjct: 87  NDNVLQTAHEQGCVKVVSCLSTCIFRDKTSYPIDETMVHNGPPHPSNYGYSYAKRLIDVQ 146

Query: 548 NRGYNESYGCMFTSVIPCNVFGPHDNFSLKSSHVIPALIRRM 673
           N  Y++ YG ++TSVIPCN+FGPHDN++ + SHVIP +I RM
Sbjct: 147 NHAYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRM 188



 Score = 37.1 bits (82), Expect = 0.028
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 715 WGSGKPLRQFIYSLXLGELFIW 780
           +GSG PLRQF+YS  L EL IW
Sbjct: 208 FGSGMPLRQFVYSRDLAELMIW 229


>AY058582-1|AAL13811.1|  350|Drosophila melanogaster LD27852p
           protein.
          Length = 350

 Score = 37.9 bits (84), Expect = 0.016
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = +2

Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
           D+ D+ Q  ++F +HK   V H AA+   +  +    L ++  NM+  + +L+A    NV
Sbjct: 67  DITDREQVRSVFQEHKIDMVAHFAAL-KAVGESCRIPLQYYHNNMTGTNVLLEAMADNNV 125

Query: 407 KKVVSCLSTCIFPDKTTYPIDE 472
            K V   S  ++ +    P+ E
Sbjct: 126 FKFVYSSSATVYGEPKFLPVTE 147


>AE014296-117|AAF47398.1|  350|Drosophila melanogaster CG12030-PA
           protein.
          Length = 350

 Score = 37.9 bits (84), Expect = 0.016
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = +2

Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
           D+ D+ Q  ++F +HK   V H AA+   +  +    L ++  NM+  + +L+A    NV
Sbjct: 67  DITDREQVRSVFQEHKIDMVAHFAAL-KAVGESCRIPLQYYHNNMTGTNVLLEAMADNNV 125

Query: 407 KKVVSCLSTCIFPDKTTYPIDE 472
            K V   S  ++ +    P+ E
Sbjct: 126 FKFVYSSSATVYGEPKFLPVTE 147


>AE014296-3568|AAS65090.1|  428|Drosophila melanogaster CG33289-PA
           protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +2

Query: 413 VVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSV 592
           + SC     FPD  + P  +  V     + +NF   Y ++ + V+N  + ++Y   F S 
Sbjct: 350 LTSCHDLIFFPDAFSTPFSQKDVKAQTNYLTNFSSEYMRKNLAVVNFFHTDNY---FRSS 406

Query: 593 IPCNVFGP 616
           +  +  GP
Sbjct: 407 VRTSYTGP 414


>AY119590-1|AAM50244.1|  506|Drosophila melanogaster LD16320p
           protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 134 QAIKTVIERDRQKRNSDYDSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLAAMVGG 313
           + ++TV   DR+ RNSD   +T  F   KD +     +  A   +  PT    L A + G
Sbjct: 168 ELLRTVGFIDRKARNSDLPQKTLNFKRVKDLNRATYAEGNATSIQFHPTSTAALVAGMNG 227

Query: 314 L 316
           L
Sbjct: 228 L 228


>AE013599-2264|AAF58006.1|  506|Drosophila melanogaster CG7989-PA
           protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 134 QAIKTVIERDRQKRNSDYDSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLAAMVGG 313
           + ++TV   DR+ RNSD   +T  F   KD +     +  A   +  PT    L A + G
Sbjct: 168 ELLRTVGFIDRKARNSDLPQKTLNFKRVKDLNRATYAEGNATSIQFHPTSTAALVAGMNG 227

Query: 314 L 316
           L
Sbjct: 228 L 228


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,730,577
Number of Sequences: 53049
Number of extensions: 794696
Number of successful extensions: 1634
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)