SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0051
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3270|AAZ66056.1| 4705|Drosophila melanogaster CG7749-PB...    29   7.4  
AE014296-3269|AAF49078.2| 4705|Drosophila melanogaster CG7749-PA...    29   7.4  

>AE014296-3270|AAZ66056.1| 4705|Drosophila melanogaster CG7749-PB,
            isoform B protein.
          Length = 4705

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 405  LHCAPDLGSMTDYRVEWLLISG*IIIITQLDFRNFVQHFV 286
            LH   D  S+  +R++   ISG +I+  +LDF    QH +
Sbjct: 1540 LHATQDPSSLALFRID--SISGNVIVTQRLDFEKTAQHIL 1577


>AE014296-3269|AAF49078.2| 4705|Drosophila melanogaster CG7749-PA,
            isoform A protein.
          Length = 4705

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 405  LHCAPDLGSMTDYRVEWLLISG*IIIITQLDFRNFVQHFV 286
            LH   D  S+  +R++   ISG +I+  +LDF    QH +
Sbjct: 1540 LHATQDPSSLALFRID--SISGNVIVTQRLDFEKTAQHIL 1577


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,562,992
Number of Sequences: 53049
Number of extensions: 416780
Number of successful extensions: 606
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -