Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0048
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D49534-1|BAA08478.1| 1893|Drosophila melanogaster cno protein.         29   7.2  
AY058547-1|AAL13776.1| 2051|Drosophila melanogaster LD24616p pro...    28   9.6  
AE014297-185|AAF52067.2| 2051|Drosophila melanogaster CG2534-PA,...    28   9.6  
AE014297-184|AAN13260.1| 1882|Drosophila melanogaster CG2534-PB,...    28   9.6  
AE014134-630|AAF51090.1|  807|Drosophila melanogaster CG15415-PA...    28   9.6  

>D49534-1|BAA08478.1| 1893|Drosophila melanogaster cno protein.
          Length = 1893

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 293  ASENQVSLGSKSAGAPQSSGKSHDEPKTAPKSAAERE 183
            AS N ++L  K  G+ QS  K +  P TAPK   +++
Sbjct: 1323 ASPNFIALPPKPLGSLQSPNKPNVPPSTAPKPQQQQQ 1359


>AY058547-1|AAL13776.1| 2051|Drosophila melanogaster LD24616p protein.
          Length = 2051

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 293  ASENQVSLGSKSAGAPQSSGKSHDEPKTAPKSAAER 186
            AS N ++L  K  G+ QS  K +  P TAPK   ++
Sbjct: 1494 ASPNFIALPPKPLGSLQSPNKPNVPPSTAPKPQQDK 1529


>AE014297-185|AAF52067.2| 2051|Drosophila melanogaster CG2534-PA,
            isoform A protein.
          Length = 2051

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 293  ASENQVSLGSKSAGAPQSSGKSHDEPKTAPKSAAER 186
            AS N ++L  K  G+ QS  K +  P TAPK   ++
Sbjct: 1494 ASPNFIALPPKPLGSLQSPNKPNVPPSTAPKPQQDK 1529


>AE014297-184|AAN13260.1| 1882|Drosophila melanogaster CG2534-PB,
            isoform B protein.
          Length = 1882

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 293  ASENQVSLGSKSAGAPQSSGKSHDEPKTAPKSAAER 186
            AS N ++L  K  G+ QS  K +  P TAPK   ++
Sbjct: 1325 ASPNFIALPPKPLGSLQSPNKPNVPPSTAPKPQQDK 1360


>AE014134-630|AAF51090.1|  807|Drosophila melanogaster CG15415-PA
           protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 266 SKSAGAPQSSGKSHDEPKTAPKSAAE 189
           S +A +P SS + H  P+T+ KSAAE
Sbjct: 457 SVAAQSPSSSAQLHTHPETSLKSAAE 482


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,351,404
Number of Sequences: 53049
Number of extensions: 641871
Number of successful extensions: 1909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)