Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060079.seq
         (691 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...    49   7e-06
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...    49   7e-06
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...    49   7e-06
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...    49   7e-06
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...    49   7e-06
U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a prote...    36   0.039
AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA...    35   0.091
AE014134-884|AAF52222.1|  299|Drosophila melanogaster CG14035-PA...    29   6.0  
BT025086-1|ABE73257.1| 1024|Drosophila melanogaster IP14647p pro...    29   7.9  
AJ011672-1|CAA09730.1|  245|Drosophila melanogaster Dve-s protei...    29   7.9  
AJ011671-1|CAA09729.1| 1021|Drosophila melanogaster Dve protein ...    29   7.9  
AE013599-3368|AAF46827.1| 1024|Drosophila melanogaster CG5799-PA...    29   7.9  
AB010299-1|BAA32660.1| 1019|Drosophila melanogaster Dve protein.       29   7.9  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/28 (78%), Positives = 22/28 (78%)
 Frame = +2

Query: 134 KEDQKXWVPVTKLGRLXREGKIDKLESI 217
           KED K WVPVTKLGRL REGKI  LE I
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEI 64


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/28 (78%), Positives = 22/28 (78%)
 Frame = +2

Query: 134 KEDQKXWVPVTKLGRLXREGKIDKLESI 217
           KED K WVPVTKLGRL REGKI  LE I
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEI 64


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/28 (78%), Positives = 22/28 (78%)
 Frame = +2

Query: 134 KEDQKXWVPVTKLGRLXREGKIDKLESI 217
           KED K WVPVTKLGRL REGKI  LE I
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEI 64


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/28 (78%), Positives = 22/28 (78%)
 Frame = +2

Query: 134 KEDQKXWVPVTKLGRLXREGKIDKLESI 217
           KED K WVPVTKLGRL REGKI  LE I
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEI 64


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 22/28 (78%), Positives = 22/28 (78%)
 Frame = +2

Query: 134 KEDQKXWVPVTKLGRLXREGKIDKLESI 217
           KED K WVPVTKLGRL REGKI  LE I
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEI 64


>U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a protein
           protein.
          Length = 1180

 Score = 36.3 bits (80), Expect = 0.039
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +3

Query: 336 IKLPSPAISATSTRSSNPR--FHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSA 509
           + L + A +AT++ S+N +   +TPTTP L  +S NPL     +FAP   PP++  +P+A
Sbjct: 42  LNLVAGAGAATNSTSANSQDSLNTPTTP-LLGLSRNPL-----QFAPPPAPPIAVPSPAA 95

Query: 510 ISP 518
             P
Sbjct: 96  SGP 98


>AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA,
           isoform A protein.
          Length = 1186

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +3

Query: 336 IKLPSPAISATSTRSSNPR--FHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSA 509
           + L + A +AT++ S+N +   +TPTTP L  +S NPL     +FAP   PP++   P+A
Sbjct: 42  LNLVAGAGAATNSTSANSQDSLNTPTTP-LLGLSRNPL-----QFAPPPAPPIAVPNPAA 95

Query: 510 ISP 518
             P
Sbjct: 96  SGP 98


>AE014134-884|AAF52222.1|  299|Drosophila melanogaster CG14035-PA
           protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 375 RSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP--SAISP 518
           R  NPR H P +P  +S    P +P+    AP   P +S   P   A+SP
Sbjct: 14  RGWNPRAHNPASPSPSSFLYRPPSPW--TTAPSPPPIISGPRPYGHAMSP 61


>BT025086-1|ABE73257.1| 1024|Drosophila melanogaster IP14647p
           protein.
          Length = 1024

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 488 VIRGSISYLTPSSLGMAKGV 547
           V RGSIS L P++LGMA GV
Sbjct: 202 VERGSISCLPPAALGMAVGV 221


>AJ011672-1|CAA09730.1|  245|Drosophila melanogaster Dve-s protein
           protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 488 VIRGSISYLTPSSLGMAKGV 547
           V RGSIS L P++LGMA GV
Sbjct: 197 VERGSISCLPPAALGMAVGV 216


>AJ011671-1|CAA09729.1| 1021|Drosophila melanogaster Dve protein
           protein.
          Length = 1021

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 488 VIRGSISYLTPSSLGMAKGV 547
           V RGSIS L P++LGMA GV
Sbjct: 199 VERGSISCLPPAALGMAVGV 218


>AE013599-3368|AAF46827.1| 1024|Drosophila melanogaster CG5799-PA,
           isoform A protein.
          Length = 1024

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 488 VIRGSISYLTPSSLGMAKGV 547
           V RGSIS L P++LGMA GV
Sbjct: 202 VERGSISCLPPAALGMAVGV 221


>AB010299-1|BAA32660.1| 1019|Drosophila melanogaster Dve protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 488 VIRGSISYLTPSSLGMAKGV 547
           V RGSIS L P++LGMA GV
Sbjct: 197 VERGSISCLPPAALGMAVGV 216


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,228,024
Number of Sequences: 53049
Number of extensions: 567088
Number of successful extensions: 2498
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2490
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)