Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060062.seq
(339 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13382-1|CAA31759.1| 407|Drosophila melanogaster protein ( Dros... 67 5e-12
BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p pro... 67 5e-12
AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p pro... 67 5e-12
AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA... 67 5e-12
X06881-1|CAA29998.1| 123|Drosophila melanogaster protein ( Dros... 38 2e-05
AE014297-152|AAF52092.2| 2228|Drosophila melanogaster CG17735-PA... 29 1.5
AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p pro... 29 2.0
AE014296-2188|AAF49882.2| 271|Drosophila melanogaster CG17666-P... 29 2.0
AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-P... 29 2.0
BT001573-1|AAN71328.1| 919|Drosophila melanogaster RE22749p pro... 28 2.7
AY118301-1|AAM48330.1| 572|Drosophila melanogaster GH08318p pro... 28 2.7
AE014297-4716|AAN14266.1| 738|Drosophila melanogaster CG1544-PB... 28 2.7
AE014297-4715|AAF57126.2| 919|Drosophila melanogaster CG1544-PA... 28 2.7
AE014296-3066|AAF49225.1| 265|Drosophila melanogaster CG6865-PA... 27 8.2
>X13382-1|CAA31759.1| 407|Drosophila melanogaster protein (
Drosophila melanogastermRNA for put. ribosomal protein
L1. ).
Length = 407
Score = 67.3 bits (157), Expect = 5e-12
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1
Query: 64 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
PIRPD+VN+VH + +N+RQ Y VS+ AGHQT AESWGTGR A
Sbjct: 34 PIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVA 77
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 9 GRAVXRIPRVRGGGTHR 59
GRAV RIPRVRGGGTHR
Sbjct: 73 GRAVARIPRVRGGGTHR 89
>BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p
protein.
Length = 233
Score = 67.3 bits (157), Expect = 5e-12
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1
Query: 64 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
PIRPD+VN+VH + +N+RQ Y VS+ AGHQT AESWGTGR A
Sbjct: 34 PIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVA 77
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 9 GRAVXRIPRVRGGGTHR 59
GRAV RIPRVRGGGTHR
Sbjct: 73 GRAVARIPRVRGGGTHR 89
>AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p
protein.
Length = 401
Score = 67.3 bits (157), Expect = 5e-12
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1
Query: 64 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
PIRPD+VN+VH + +N+RQ Y VS+ AGHQT AESWGTGR A
Sbjct: 34 PIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVA 77
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 9 GRAVXRIPRVRGGGTHR 59
GRAV RIPRVRGGGTHR
Sbjct: 73 GRAVARIPRVRGGGTHR 89
>AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA
protein.
Length = 401
Score = 67.3 bits (157), Expect = 5e-12
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1
Query: 64 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
PIRPD+VN+VH + +N+RQ Y VS+ AGHQT AESWGTGR A
Sbjct: 34 PIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVA 77
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 9 GRAVXRIPRVRGGGTHR 59
GRAV RIPRVRGGGTHR
Sbjct: 73 GRAVARIPRVRGGGTHR 89
>X06881-1|CAA29998.1| 123|Drosophila melanogaster protein (
Drosophila gene forribosomal protein L1 fragment. ).
Length = 123
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 9 GRAVXRIPRVRGGGTHR 59
GRAV RIPRVRGGGTHR
Sbjct: 11 GRAVARIPRVRGGGTHR 27
Score = 34.7 bits (76), Expect(2) = 2e-05
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1
Query: 181 GRMFAPTKPXRSWXRRVNL 237
GRMFAPTK R W RRVN+
Sbjct: 40 GRMFAPTKTFRRWHRRVNV 58
Score = 30.3 bits (65), Expect(2) = 2e-05
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 151 HQTXAESWGTGRMFA 195
HQT AESWGTGR A
Sbjct: 1 HQTSAESWGTGRAVA 15
>AE014297-152|AAF52092.2| 2228|Drosophila melanogaster CG17735-PA
protein.
Length = 2228
Score = 29.1 bits (62), Expect = 1.5
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -1
Query: 282 AGSSNGYLPXRSPLSXVDATVPTPXGLRGGEHTSSTP*FSXGLVTSLLAHAVGLPRVLGH 103
AGS G P S S + + L G STP G +S G G
Sbjct: 979 AGSGPGGAPPSSSGSAMHELLSRATSLGSGNGGRSTPNSGGGSGSSKSRFNAGNSSNAGS 1038
Query: 102 RNVNII---DQVRTDGRTYEYHHHGHAEFGRQH 13
+ + + R +T++ HHH H + +QH
Sbjct: 1039 SKSSFLASLNPARWGRQTHQNHHHHHQQSQQQH 1071
>AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p
protein.
Length = 872
Score = 28.7 bits (61), Expect = 2.0
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = +2
Query: 11 TCCRP-NSACPWWWY 52
TCC P ++ CPW WY
Sbjct: 718 TCCMPCSNQCPWSWY 732
>AE014296-2188|AAF49882.2| 271|Drosophila melanogaster CG17666-PB,
isoform B protein.
Length = 271
Score = 28.7 bits (61), Expect = 2.0
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = +2
Query: 11 TCCRP-NSACPWWWY 52
TCC P ++ CPW WY
Sbjct: 117 TCCMPCSNQCPWSWY 131
>AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-PA,
isoform A protein.
Length = 872
Score = 28.7 bits (61), Expect = 2.0
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = +2
Query: 11 TCCRP-NSACPWWWY 52
TCC P ++ CPW WY
Sbjct: 718 TCCMPCSNQCPWSWY 732
>BT001573-1|AAN71328.1| 919|Drosophila melanogaster RE22749p
protein.
Length = 919
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +3
Query: 99 FYVQELEAALLR----EQGGWSPNQX*IMGYWTYVRP 197
F +QEL+A L + + WS + MG WT+VRP
Sbjct: 840 FPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRP 876
>AY118301-1|AAM48330.1| 572|Drosophila melanogaster GH08318p
protein.
Length = 572
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +3
Query: 99 FYVQELEAALLR----EQGGWSPNQX*IMGYWTYVRP 197
F +QEL+A L + + WS + MG WT+VRP
Sbjct: 493 FPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRP 529
>AE014297-4716|AAN14266.1| 738|Drosophila melanogaster CG1544-PB,
isoform B protein.
Length = 738
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +3
Query: 99 FYVQELEAALLR----EQGGWSPNQX*IMGYWTYVRP 197
F +QEL+A L + + WS + MG WT+VRP
Sbjct: 659 FPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRP 695
>AE014297-4715|AAF57126.2| 919|Drosophila melanogaster CG1544-PA,
isoform A protein.
Length = 919
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +3
Query: 99 FYVQELEAALLR----EQGGWSPNQX*IMGYWTYVRP 197
F +QEL+A L + + WS + MG WT+VRP
Sbjct: 840 FPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRP 876
>AE014296-3066|AAF49225.1| 265|Drosophila melanogaster CG6865-PA
protein.
Length = 265
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 121 QPYCVSKEAGHQTXAESWGT 180
QP CV E GH++ + +GT
Sbjct: 131 QPSCVGSEEGHRSLEQEYGT 150
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,532
Number of Sequences: 53049
Number of extensions: 281133
Number of successful extensions: 1553
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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