Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060054.seq
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3801|AAF56468.1|  640|Drosophila melanogaster CG5127-PA...    51   1e-06
AY070542-1|AAL48013.1|  561|Drosophila melanogaster LD23683p pro...    43   4e-04
X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like p...    40   0.003
AY058443-1|AAL13672.1|  477|Drosophila melanogaster GH22740p pro...    29   8.6  
AE014134-929|AAF52257.1|  477|Drosophila melanogaster CG7277-PA ...    29   8.6  

>AE014297-3801|AAF56468.1|  640|Drosophila melanogaster CG5127-PA
           protein.
          Length = 640

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
 Frame = +1

Query: 259 QNKLQNILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMD--PQLGPTANPN 432
           Q KL +IL     KK+LI++P LIK LE +   +WL+  G+ +IYK D    L  +A+  
Sbjct: 17  QEKLCSILCSIPGKKELILEPDLIKPLEHVVTASWLKLKGIQRIYKHDAAQSLPRSADQV 76

Query: 433 RVYFIPACIIKYKCVL 480
            +Y I + +  ++ +L
Sbjct: 77  HIYMIRSVLGTFQTLL 92



 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +3

Query: 534 FHIIIIPKVLNSFDSILESKGLYGVVKLHPLAWGINGPR*SVIEFRVPFLFKQLFVDQ 707
           +HI+ +P   + F ++LE  GLYG+V+LH   W        V+   +P L++ L++ +
Sbjct: 111 YHIVCVPSCYSYFQTLLEQAGLYGLVQLHHFNWDFIYFDQGVLSLELPNLYECLYLQK 168


>AY070542-1|AAL48013.1|  561|Drosophila melanogaster LD23683p
           protein.
          Length = 561

 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +3

Query: 534 FHIIIIPKVLNSFDSILESKGLYGVVKLHPLAWGINGPR*SVIEFRVPFLFKQLFVDQ 707
           +HI+ +P   + F ++LE  GLYG+V+LH   W        V+   +P L++ L++ +
Sbjct: 32  YHIVCVPSCYSYFQTLLEQAGLYGLVQLHHFNWDFIYFDQGVLSLELPNLYECLYLQK 89


>X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like
          protein protein.
          Length = 110

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 1  AAALELVDPPGCRNSARE 54
          AAALELVDPPGCRNSAR+
Sbjct: 7  AAALELVDPPGCRNSARD 24


>AY058443-1|AAL13672.1|  477|Drosophila melanogaster GH22740p
           protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -2

Query: 715 GLIWST-NNCLNKNGTLNSITDHRGPLI---PHASGCNLTTPYKPLLSNIESNEFKTFGI 548
           GL+ +T    L KN TL    D +  L+   P   G N T PY+  +S I  N  + F  
Sbjct: 57  GLVGTTLAAALAKNSTL---ADKKVLLLEGAPEFRGFNPTGPYQNRVSAINHNSIELFKS 113

Query: 547 IMMWKPFTSA 518
           I  WK   SA
Sbjct: 114 IDAWKHIESA 123


>AE014134-929|AAF52257.1|  477|Drosophila melanogaster CG7277-PA
           protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -2

Query: 715 GLIWST-NNCLNKNGTLNSITDHRGPLI---PHASGCNLTTPYKPLLSNIESNEFKTFGI 548
           GL+ +T    L KN TL    D +  L+   P   G N T PY+  +S I  N  + F  
Sbjct: 57  GLVGTTLAAALAKNSTL---ADKKVLLLEGAPEFRGFNPTGPYQNRVSAINHNSIELFKS 113

Query: 547 IMMWKPFTSA 518
           I  WK   SA
Sbjct: 114 IDAWKHIESA 123


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,970,500
Number of Sequences: 53049
Number of extensions: 686306
Number of successful extensions: 1346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)