Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A08
         (857 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...   103   2e-22
AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    35   0.12 
AY118375-1|AAM48404.1|  530|Drosophila melanogaster RE18723p pro...    31   1.5  

>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type II retrotransposable
            element  R2Dm.  ).
          Length = 1057

 Score =  103 bits (248), Expect = 2e-22
 Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
 Frame = +1

Query: 13   GGKPLRQVSCVERWRYLGVDFEASGCVTLE--HSISSALNNISRAPLKPQQRLEILRAHL 186
            G   +  +   + W+YLG++F A+G V       I   L  +++APLKPQQRL  LR  L
Sbjct: 640  GSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIGPKLQRLTKAPLKPQQRLFALRTVL 699

Query: 187  IPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRA 366
            IP+  H    G+++   LR  D  IR  V +WL LP DVP A+ HA  + GGL IPS+R 
Sbjct: 700  IPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLPLDVPIAFVHAPPKSGGLGIPSLRW 759

Query: 367  TIPDLIVRRFGGL 405
              P L +RR   +
Sbjct: 760  VAPMLRLRRLSNI 772


>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
           endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 668 LDGRWNFRAHFAKLGPRLMATAGSLXRLLPNVGGSR 775
           +D R +F+AH      +   TA +L R++PNVGG R
Sbjct: 724 IDRRLSFKAHARYASKKAAMTAAALARIMPNVGGPR 759


>AY118375-1|AAM48404.1|  530|Drosophila melanogaster RE18723p
           protein.
          Length = 530

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 58  YLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVFGNISDDR 237
           ++ VD ++S C ++E + +S  +N S     P  ++   + HL       F F  IS  R
Sbjct: 440 FMDVDSQSSQCPSVERNFASPRSNCSTVDSIPPMQMGQNQTHLYLPDATNFTFNGIS-HR 498

Query: 238 LRMLDVQ 258
           LR + VQ
Sbjct: 499 LRPIAVQ 505


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,558,639
Number of Sequences: 53049
Number of extensions: 1044844
Number of successful extensions: 3776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3767
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)