Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40035
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   127   1e-29
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  127 bits (306), Expect = 1e-29
 Identities = 60/94 (63%), Positives = 72/94 (76%)
 Frame = +1

Query: 229 GKKHNDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
           GK     ++++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GA
Sbjct: 56  GKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGA 115

Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
           IAP  V +P  NTG+GPEKTSFFQAL IPTKI+R
Sbjct: 116 IAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIAR 149



 Score =  100 bits (240), Expect = 1e-21
 Identities = 41/64 (64%), Positives = 56/64 (87%)
 Frame = +2

Query: 65  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTM 244
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 245 MRKA 256
           +RKA
Sbjct: 61  IRKA 64



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 40/65 (61%), Positives = 52/65 (80%)
 Frame = +3

Query: 492 PYQDFKGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGIFFALKF 671
           P +  +GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD G  +  + 
Sbjct: 144 PTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEV 203

Query: 672 LDIQT 686
           LD+ T
Sbjct: 204 LDMTT 208


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 38  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSS 217
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 218 IVLMGKNTMM 247
               GKN ++
Sbjct: 65  RFFFGKNNVI 74



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 286 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 435
           L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLP 139


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 20  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 133
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 428 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 318
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,619,723
Number of Sequences: 27780
Number of extensions: 512873
Number of successful extensions: 1521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)