Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40034
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70851-3|AAB09129.1| 293|Caenorhabditis elegans Hypothetical pr... 72 6e-13
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical pr... 29 3.4
U53336-10|AAA96182.2| 125|Caenorhabditis elegans Hypothetical p... 29 3.4
AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H... 29 3.4
Z93382-2|CAB07612.2| 639|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81479-9|CAE17735.1| 215|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U70851-3|AAB09129.1| 293|Caenorhabditis elegans Hypothetical
protein M02B7.4 protein.
Length = 293
Score = 71.7 bits (168), Expect = 6e-13
Identities = 35/90 (38%), Positives = 51/90 (56%)
Frame = +3
Query: 297 EAENKQSTYLLNKIPRSRKVNQSYFSSVFSTIYSTLITVPVIYKFKPNVIFCNGPGTCIP 476
E + + KIPRSR+V QSY +S+ STI +T V +IY+ +P++I NGPGTCIP
Sbjct: 105 EKSRNNEKFCIEKIPRSREVGQSYLTSIGSTINATAFAVKLIYRIRPDLIVLNGPGTCIP 164
Query: 477 ICVVAFILRIFFYWIVELFSLKVFVE*DHC 566
+ + A F+ I+ L + E C
Sbjct: 165 VALAA-----AFFDIIRLIDTVIIYEESIC 189
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 494 YIENLFLLDCRIVFIESICRVRSLSLTG 577
+ + + L+D I++ ESICRV+ LSL+G
Sbjct: 171 FFDIIRLIDTVIIYEESICRVKKLSLSG 198
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 455 WSRNLYSNLCSCIYIENLFLLDCRIVFIESICRVRSLS 568
+SR++ +N C+++E + CR+ + S+C++ LS
Sbjct: 179 FSRHV-TNFTVCLFLEEESIFQCRLPLLRSVCQILHLS 215
>Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical
protein K09C8.1 protein.
Length = 783
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 40 ILSFLCLIFTALVIGVIARVIYLLIKIFTTE 132
+LSFLC+ L+IG+I I + FTT+
Sbjct: 304 LLSFLCVSIGGLIIGLICGAISSFVTKFTTD 334
>U53336-10|AAA96182.2| 125|Caenorhabditis elegans Hypothetical
protein K07C11.10 protein.
Length = 125
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 115 KIFTTECALYQDSNLRSIFC 174
K+F EC L+QD L IFC
Sbjct: 40 KLFVDECYLFQDETLTPIFC 59
>AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H
exchanger isoform 7 protein.
Length = 783
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 40 ILSFLCLIFTALVIGVIARVIYLLIKIFTTE 132
+LSFLC+ L+IG+I I + FTT+
Sbjct: 304 LLSFLCVSIGGLIIGLICGAISSFVTKFTTD 334
>Z93382-2|CAB07612.2| 639|Caenorhabditis elegans Hypothetical
protein F45G2.3 protein.
Length = 639
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 97 VIYLLIKIFTTECALYQDSNLRSIFCIGSGGHTTELLRFMR 219
+IY + T EC++Y+ NL++ F GG + ++F R
Sbjct: 182 MIYFKWQSATGECSVYEKCNLKNCFTGELGGDKFDFVKFRR 222
>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
protein T14E8.1c protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 743 IIPFYQSVSQGGWQCPCHCGW 805
+ P Q++ QGGW+ P C W
Sbjct: 496 LYPNCQTLRQGGWEDPLECSW 516
>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
protein T14E8.1b protein.
Length = 1030
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 743 IIPFYQSVSQGGWQCPCHCGW 805
+ P Q++ QGGW+ P C W
Sbjct: 496 LYPNCQTLRQGGWEDPLECSW 516
>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
protein T14E8.1a protein.
Length = 1086
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 743 IIPFYQSVSQGGWQCPCHCGW 805
+ P Q++ QGGW+ P C W
Sbjct: 496 LYPNCQTLRQGGWEDPLECSW 516
>Z81479-9|CAE17735.1| 215|Caenorhabditis elegans Hypothetical
protein C34F6.11 protein.
Length = 215
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 610 SAWATTERCESSC*NIWVDLHNLIA*W 690
S + T CE+ NIW+ L+NLIA W
Sbjct: 89 STFYTRINCENGI-NIWIPLNNLIATW 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,327,249
Number of Sequences: 27780
Number of extensions: 472964
Number of successful extensions: 1288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -