Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40028
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U23525-3|AAC46566.2|  579|Caenorhabditis elegans Nematode astaci...    24   6.7  
U23525-4|AAU05558.1|  455|Caenorhabditis elegans Nematode astaci...    24   6.9  
Z81017-4|CAB02668.1|  181|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 553 PTRCSGISPWTTACLTDRDLARYL 482
           PT C  I  W T C  D + A Y+
Sbjct: 257 PTSCETIKQWMTKCADDSETANYI 280


>U23525-3|AAC46566.2|  579|Caenorhabditis elegans Nematode astacin
           protease protein11, isoform a protein.
          Length = 579

 Score = 24.2 bits (50), Expect(2) = 6.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 738 NVMWFSGNLKALNSPSACLRRW*RSSQTDTGRRNIRFRIY 619
           + ++F GNL     PS+ +R    SS  D  + ++R  IY
Sbjct: 329 SALYFEGNLIKKWDPSSPIRYVLDSSLEDLDKNDVRAAIY 368



 Score = 22.6 bits (46), Expect(2) = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 516 RA*LTEISPDTCFPFCLTMAPKTGS 442
           RA + EI  +TC  F    +P TGS
Sbjct: 364 RAAIYEIEKNTCIRFKELSSPPTGS 388


>U23525-4|AAU05558.1|  455|Caenorhabditis elegans Nematode astacin
           protease protein11, isoform b protein.
          Length = 455

 Score = 24.2 bits (50), Expect(2) = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 738 NVMWFSGNLKALNSPSACLRRW*RSSQTDTGRRNIRFRIY 619
           + ++F GNL     PS+ +R    SS  D  + ++R  IY
Sbjct: 329 SALYFEGNLIKKWDPSSPIRYVLDSSLEDLDKNDVRAAIY 368



 Score = 22.6 bits (46), Expect(2) = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 516 RA*LTEISPDTCFPFCLTMAPKTGS 442
           RA + EI  +TC  F    +P TGS
Sbjct: 364 RAAIYEIEKNTCIRFKELSSPPTGS 388


>Z81017-4|CAB02668.1|  181|Caenorhabditis elegans Hypothetical
           protein F58A3.3 protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
 Frame = +1

Query: 349 QSNEEGLQSIPFRLRRAQRAEHHSL*RREGTRAGLGSHRQAKRKAGIG-----RDLGQSG 513
           Q  +E LQ +       QR       R+  T +   S R+ ++  GIG       L +S 
Sbjct: 46  QEEDEELQELQLPPPPMQRVSRMGSIRKAMTISFQNSLRRTRKIFGIGVAPVTEYLPKSE 105

Query: 514 TPLSMEIFLNNESASVYGLLVNYMHVTDTGKQQETINSETDVPSTRICLRTSSPP 678
             + ++ F  NES  +      +  V  T  + +   S   +P +  CL T   P
Sbjct: 106 QDVHIQRFNRNESVRLSRCSTKHYEVIKTHSEDKIFTSVRPIPPSSTCLLTKFFP 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,461,828
Number of Sequences: 27780
Number of extensions: 491148
Number of successful extensions: 1153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)