Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40021
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   142   1e-34
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    27   6.0  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    27   6.0  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  142 bits (343), Expect = 1e-34
 Identities = 61/86 (70%), Positives = 75/86 (87%)
 Frame = -3

Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 80
           P  V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNM
Sbjct: 118 PCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNM 177

Query: 79  LNISPFSYGLVVKQVYDSGTIFAPEI 2
           L ++PFSYGLVV+QVYD GT++ PE+
Sbjct: 178 LGVTPFSYGLVVRQVYDDGTLYTPEV 203



 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 33/49 (67%), Positives = 37/49 (75%)
 Frame = -1

Query: 381 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPCQSSFPP 235
           KLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAPC    PP
Sbjct: 77  KLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPP 125


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 278 AGAWTLFSNSLSRTSTRSPRVNTKPT 355
           A  WT+ +N ++R  TR P    +PT
Sbjct: 202 AAGWTIRANGITRGQTRVPGTTREPT 227


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 321 EVRDKLLENKVQAPARPGAIAPCQSSFPP 235
           E+RD+LL  K +       +AP Q++ PP
Sbjct: 465 EIRDQLLRAKSKIVLPNSVVAPIQTTLPP 493


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 93  PFSTC*TSLHSHMVLLLSRYMIL 25
           PFST  T +HSH++  L  +++L
Sbjct: 286 PFSTAKTVIHSHIISFLIGFLLL 308


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 218 TEAGVVGGNDD*HGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLM 367
           T AG +  N D  G++ P  +     F+ +  R+++R PR  T P   +M
Sbjct: 413 TFAGGISNNADDDGSLQPTTSSH---FNRNTDRSTSRPPRAPTSPVNRVM 459


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 218 TEAGVVGGNDD*HGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLM 367
           T AG +  N D  G++ P  +     F+ +  R+++R PR  T P   +M
Sbjct: 417 TFAGGISNNADDDGSLQPTTSSH---FNRNTDRSTSRPPRAPTSPVNRVM 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,328,645
Number of Sequences: 27780
Number of extensions: 186481
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)