Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40016
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 31 1.2
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 30 1.6
U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical pr... 30 2.1
AC024756-5|AAK29880.3| 414|Caenorhabditis elegans Hypothetical ... 30 2.1
Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 3.7
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 29 3.7
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 29 3.7
Z82280-3|CAB05265.1| 387|Caenorhabditis elegans Hypothetical pr... 29 4.9
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 4.9
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 6.4
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 6.4
AL132904-17|CAC35850.1| 240|Caenorhabditis elegans Hypothetical... 28 8.5
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/61 (40%), Positives = 28/61 (45%)
Frame = +1
Query: 193 ASSTSVTWARCGAWWRGAGTWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAP 372
ASSTS A GA PSSA P+R PP AA + RA S AP+P
Sbjct: 218 ASSTSAPPKTTAA---GAPKRPSSAVA-PRRAPPASAAPTRRAPSPKAPVVAPTRRAPSP 273
Query: 373 K 375
K
Sbjct: 274 K 274
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 30.3 bits (65), Expect = 1.6
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 5/137 (3%)
Frame = +1
Query: 16 TDGSGRTV--ATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGAT 189
+DGS ++V T T+ P+T S E T T + +TTT T ++ V T
Sbjct: 225 SDGSQQSVESTTTTTESPTTEASTTTTEA---PTTTTSEEVTTTEITTEAPTTTEEVTTT 281
Query: 190 RAS---STSVTWARCGAWWRGAGTWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHT 360
+ T+ T R T ++A P R + T PTT + T
Sbjct: 282 ETTIEAQTTTTTERMSPSTTKTST-TTTAKPTTTRSTTTQRPQTVATTEAPTTTTVEDVT 340
Query: 361 APAPKCNCTDTXTSARS 411
AP+ C SA S
Sbjct: 341 TRAPRTECERRRASASS 357
>U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical
protein T26A8.1 protein.
Length = 708
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Frame = +1
Query: 64 STGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSVTWARCGAWWRG 243
STG + + T + TTT+ T P + V+ T S+TS A R
Sbjct: 322 STGSTVETTPSTSTTTTSSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRD 381
Query: 244 A-----GTWPSSAT----PXPQRCPPDDAASSGRATSCPTTCNLYVHT 360
+ G P+S+ P P+ CP D G + T + ++ T
Sbjct: 382 SKEDTNGVLPTSSAIETPPYPENCPEDSLFLPGTIAASEETSSSFIKT 429
>AC024756-5|AAK29880.3| 414|Caenorhabditis elegans Hypothetical
protein Y34D9A.7 protein.
Length = 414
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 401 RQGPRIGPDGAGE-SYRTRRFFEFNGIRSTILRGCHFDEFSFSMFYSQPHYSDLIFSDVA 577
R+ +GPD E YR RR + G LR EF+ YS+ H + + +D
Sbjct: 151 RKALSLGPDDIPEWVYRMRRLGFYRGYPPGYLRKSLKREFATLKIYSEDHNQEEVDNDDD 210
Query: 578 VRLKPLP 598
+P P
Sbjct: 211 EEARPAP 217
>Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical
protein F36H1.9 protein.
Length = 160
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +3
Query: 450 LDAFSNLMVYALQFYG----AVTSMNSVSACSTLSLII 551
L FSN++ YA+QF+ +T+M ++ AC TL + +
Sbjct: 29 LIGFSNILSYAIQFHNWSALTLTAMVTLVACHTLQMFL 66
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -3
Query: 355 GHRDCRSSGKRSRAQNSRRRPADTSAGMVWRTKATSPPPSTMHRTAPT*PKYCSLASRRQ 176
G + R + K + SR+ P TSA T +PPPS ++P+ Y + S
Sbjct: 1183 GAKSGRQTVKNIKRAGSRKTP--TSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPN 1240
Query: 175 RLKEAP 158
R++ +P
Sbjct: 1241 RMETSP 1246
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -3
Query: 355 GHRDCRSSGKRSRAQNSRRRPADTSAGMVWRTKATSPPPSTMHRTAPT*PKYCSLASRRQ 176
G + R + K + SR+ P TSA T +PPPS ++P+ Y + S
Sbjct: 1183 GAKSGRQTVKNIKRAGSRKTP--TSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPN 1240
Query: 175 RLKEAP 158
R++ +P
Sbjct: 1241 RMETSP 1246
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.elegans
glp-1 gene,complete cds. ).
Length = 1295
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -3
Query: 355 GHRDCRSSGKRSRAQNSRRRPADTSAGMVWRTKATSPPPSTMHRTAPT*PKYCSLASRRQ 176
G + R + K + SR+ P TSA T +PPPS ++P+ Y + S
Sbjct: 1183 GAKSGRQTVKNIKRAGSRKTP--TSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPN 1240
Query: 175 RLKEAP 158
R++ +P
Sbjct: 1241 RMETSP 1246
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 325 SCPTTCNLYVHTAP-APKCNCTDTXTSARSQDRS 423
+C TCN+ TAP +P+ CTD T ++ S
Sbjct: 132 NCARTCNMCYSTAPVSPQYACTDLLTDCANRTAS 165
>Z82280-3|CAB05265.1| 387|Caenorhabditis elegans Hypothetical
protein R05A10.3 protein.
Length = 387
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 66 YWTKSCAPGALSSEYVDSGSLPYDNLXHLSHGASFRR 176
YWTKS S+ +D S Y+ L H+ RR
Sbjct: 214 YWTKSTPKDFTISQKIDQSSPGYNQLLHMLEDLKHRR 250
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.7 bits (61), Expect = 4.9
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 5/138 (3%)
Frame = +1
Query: 37 VATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSVTW 216
+A+ T + G S P + + + ++ S T V S VGAT+ S +S T
Sbjct: 1493 IASSSTMGSTAGSSSPQPTVSSTSVPSSTGATSSGSSTTVG---SSTVGATQTSVSSSTV 1549
Query: 217 ARCGAWWRGAGTWPS-----SATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAPKCN 381
G+ T PS S + Q P AA++G +TS PT ++ N
Sbjct: 1550 PNTGSTGSTV-TNPSTSSSTSGSSSTQSIPSSTAANTGSSTSGPTVATTQGSSSTQTNSN 1608
Query: 382 CTDTXTSARSQDRS*WGG 435
T + S GG
Sbjct: 1609 TGSTTVATTVTQGSSTGG 1626
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = +1
Query: 34 TVATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSVT 213
T +T T P T P+ + T T A TTT+ T P + T ++S +
Sbjct: 480 TTSTTTTTAPITVPTVSPTTTTTRQTTTTARTSTTTTTT--QAPPT----TTTSTSQCAS 533
Query: 214 WARCGAWWRGAGT 252
W+ C A G GT
Sbjct: 534 WSACSAQCGGCGT 546
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = +1
Query: 34 TVATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSVT 213
T +T T P T P+ + T T A TTT+ T P + T ++S +
Sbjct: 480 TTSTTTTTAPITVPTVSPTTTTTRQTTTTARTSTTTTTT--QAPPT----TTTSTSQCAS 533
Query: 214 WARCGAWWRGAGT 252
W+ C A G GT
Sbjct: 534 WSACSAQCGGCGT 546
>AL132904-17|CAC35850.1| 240|Caenorhabditis elegans Hypothetical
protein Y111B2A.21 protein.
Length = 240
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 31 RTVATGPTQQP-STGPSPAHPER*ALNTWTRA 123
R TGP +P PSP P + + TWT A
Sbjct: 60 RNDETGPRSEPVDVKPSPKRPTKRSAETWTTA 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,550
Number of Sequences: 27780
Number of extensions: 367416
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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