SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40014
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    30   2.4  
AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    29   4.2  
U41274-4|AAA82460.1|  297|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    28   7.3  
U41038-2|AAX88827.1|  635|Caenorhabditis elegans Serotonin/octop...    28   9.7  
U41038-1|AAK29709.2|  683|Caenorhabditis elegans Serotonin/octop...    28   9.7  
U13876-11|AAN63395.1|  201|Caenorhabditis elegans Coenzyme q (ub...    28   9.7  
U13876-10|AAN63394.1|  216|Caenorhabditis elegans Coenzyme q (ub...    28   9.7  
U13876-9|AAW88395.1|  356|Caenorhabditis elegans Coenzyme q (ubi...    28   9.7  
U13876-8|AAN63396.1|  370|Caenorhabditis elegans Coenzyme q (ubi...    28   9.7  
U13876-7|AAW88396.1|  427|Caenorhabditis elegans Coenzyme q (ubi...    28   9.7  
AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin rec...    28   9.7  
AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin rec...    28   9.7  

>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 778 ILIKFNFHFTLVIFKGIRFFD 840
           ILI  NFHF L+  K ++FF+
Sbjct: 107 ILISINFHFLLLTLKNVKFFN 127


>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +2

Query: 236 CIMKDIMNTSPRNTLSTTRRPISLTPVQDALLATSPSEIRASKPWRKWRCTCMTILAE 409
           C   DI  + P N   T ++ I    V +A+LA + + ++A+KP  +W  T M IL+E
Sbjct: 280 CYASDITTSFPSNGKFTEKQKI----VYNAVLAANLAVLKAAKPGVRW--TDMHILSE 331


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 2   ELGYVDDN--MEPNFEHIRARIGSLPVSDELKGDIQEGLQFCQKFSQCVPEEK 154
           EL  +  N  +   FEH++  + S+P+  E   D+ + L+ C +    V  +K
Sbjct: 335 ELAAISGNSLISDGFEHLKNLLSSVPLDIENSADVLKKLEACYRLHPAVSPDK 387


>U41274-4|AAA82460.1|  297|Caenorhabditis elegans Hypothetical
           protein T04G9.4 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +2

Query: 143 PEEKRDIVARPQEQIRSIFFFR--CYKHKKLEAC---IMKDIMNTSPRNTLSTTRRP 298
           PEE R + ++P E ++   F+R  C K   L+A    IMKD+ +   R  L    RP
Sbjct: 148 PEELRMMRSQPTEAMKMTMFYRYWCLKEAILKATGVGIMKDLNSLDFRVNLQDRYRP 204


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 96  SPLSSSETGRLPILALMCSKFGSMLSSTYPNS 1
           SP S+S T   P  A   + +GS + STYP S
Sbjct: 17  SPASTSSTAYSPPPATSSTTYGSSIPSTYPPS 48


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 96  SPLSSSETGRLPILALMCSKFGSMLSSTYPNS 1
           SP S+S T   P  A   + +GS + STYP S
Sbjct: 122 SPASTSSTAYSPPPATSSTTYGSSIPSTYPPS 153


>U41038-2|AAX88827.1|  635|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform b
           protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 173 PQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLST 286
           PQ+  RS     C K +K+ +  + D+M TS  +T ST
Sbjct: 574 PQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTASTAST 611


>U41038-1|AAK29709.2|  683|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform a
           protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 173 PQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLST 286
           PQ+  RS     C K +K+ +  + D+M TS  +T ST
Sbjct: 622 PQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTASTAST 659


>U13876-11|AAN63395.1|  201|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform d protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
           ++ S +  +ST T++P+SL P   +L+A+SP  ++
Sbjct: 29  LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63


>U13876-10|AAN63394.1|  216|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform c protein.
          Length = 216

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
           ++ S +  +ST T++P+SL P   +L+A+SP  ++
Sbjct: 29  LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63


>U13876-9|AAW88395.1|  356|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform a protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
           ++ S +  +ST T++P+SL P   +L+A+SP  ++
Sbjct: 29  LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63


>U13876-8|AAN63396.1|  370|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform e protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
           ++ S +  +ST T++P+SL P   +L+A+SP  ++
Sbjct: 29  LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63


>U13876-7|AAW88396.1|  427|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform b protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
           ++ S +  +ST T++P+SL P   +L+A+SP  ++
Sbjct: 29  LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63


>AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 173 PQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLST 286
           PQ+  RS     C K +K+ +  + D+M TS  +T ST
Sbjct: 574 PQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTASTAST 611


>AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 173 PQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLST 286
           PQ+  RS     C K +K+ +  + D+M TS  +T ST
Sbjct: 622 PQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTASTAST 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,343
Number of Sequences: 27780
Number of extensions: 313631
Number of successful extensions: 813
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -