Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40011
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 71 3e-13
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 30 0.42
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 30 0.42
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 30 0.42
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 30 0.42
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 30 0.42
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 1.7
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr... 27 3.0
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 27 3.0
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 27 3.0
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 27 3.0
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 27 3.0
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 27 3.0
AF016451-9|AAB66005.2| 524|Caenorhabditis elegans Udp-glucurono... 27 3.0
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 27 3.9
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 27 3.9
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ... 27 3.9
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 27 3.9
Z75533-1|CAA99815.1| 423|Caenorhabditis elegans Hypothetical pr... 27 5.2
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 26 6.9
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 26 6.9
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 26 6.9
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 26 6.9
Z81496-13|CAB04075.1| 365|Caenorhabditis elegans Hypothetical p... 26 9.1
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 26 9.1
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 26 9.1
AL031627-26|CAA20972.1| 365|Caenorhabditis elegans Hypothetical... 26 9.1
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 26 9.1
AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical ... 26 9.1
AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical ... 26 9.1
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 70.5 bits (165), Expect = 3e-13
Identities = 37/82 (45%), Positives = 48/82 (58%)
Frame = +3
Query: 15 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXX 194
SGLLLVTGP N PLRRI Q +VI TS ++++ K+P+H ND+YF
Sbjct: 98 SGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF------KRKSTA 151
Query: 195 XXEGDDIFATKKEKYVPSEQAK 260
G +IFA+ K +Y SEQ K
Sbjct: 152 QKTGKNIFASGKTEYTVSEQRK 173
Score = 32.7 bits (71), Expect = 0.079
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 257 KTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 358
K D KTVD ++ AI P+ K L GYL F L
Sbjct: 173 KKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSL 206
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 97 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFHLSRQNRS 267
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 268 EDSRRGCDQSHRS 306
+ +++ Q+ R+
Sbjct: 558 DINKKLISQTSRA 570
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 97 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFHLSRQNRS 267
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 632
Query: 268 EDSRRGCDQSHRS 306
+ +++ Q+ R+
Sbjct: 633 DINKKLISQTSRA 645
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 97 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFHLSRQNRS 267
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 566
Query: 268 EDSRRGCDQSHRS 306
+ +++ Q+ R+
Sbjct: 567 DINKKLISQTSRA 579
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 97 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFHLSRQNRS 267
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 710
Query: 268 EDSRRGCDQSHRS 306
+ +++ Q+ R+
Sbjct: 711 DINKKLISQTSRA 723
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 97 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNA-KRVMTSLPQKKRNTFHLSRQNRS 267
PPP S TS NC ++ + + + SAS S +RV ++ P + + QN +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 268 EDSRRGCDQSHRS 306
+ +++ Q+ R+
Sbjct: 558 DINKKLISQTSRA 570
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 1.7
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Frame = +1
Query: 91 SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSE 270
S PPP ++T + QN+ S+ R Q+ +R + Q++R H Q+R
Sbjct: 106 SVPPPTIGASTHSNQNSRQQEPSQNRRRRGGQQNTQRRQLEI--QEQRGDSHPQNQSRQN 163
Query: 271 DSR-----RGCDQSHRS---PTRQEGAPRIPQSGLR 354
+ R +Q ++S P+R G R Q R
Sbjct: 164 NRNQLNVDRIANQQNKSVQNPSRNPGNSRRGQGARR 199
>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
F23D12.2 protein.
Length = 1322
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 199 KRVMTSLPQKK-RNTFHLSRQNRSEDSRRGCDQSHRSPT 312
KR+ L +KK T H+S QN C +HR+P+
Sbjct: 933 KRMKEYLEKKKCLTTLHISSQNLQSSHTTDCVVNHRNPS 971
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 27.5 bits (58), Expect = 3.0
Identities = 22/86 (25%), Positives = 34/86 (39%)
Frame = +1
Query: 100 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSR 279
PP FH A N Q +MM +RI A + Q R R T +S ++ +
Sbjct: 639 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRT------PSRQTISVSDSHKIHELA 691
Query: 280 RGCDQSHRSPTRQEGAPRIPQSGLRT 357
+ + R +Q P+ P + T
Sbjct: 692 KSRENQQR---QQSATPKTPSESVST 714
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.5 bits (58), Expect = 3.0
Identities = 22/86 (25%), Positives = 34/86 (39%)
Frame = +1
Query: 100 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSR 279
PP FH A N Q +MM +RI A + Q R R T +S ++ +
Sbjct: 621 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRT------PSRQTISVSDSHKIHELA 673
Query: 280 RGCDQSHRSPTRQEGAPRIPQSGLRT 357
+ + R +Q P+ P + T
Sbjct: 674 KSRENQQR---QQSATPKTPSESVST 696
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.5 bits (58), Expect = 3.0
Identities = 22/86 (25%), Positives = 34/86 (39%)
Frame = +1
Query: 100 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSR 279
PP FH A N Q +MM +RI A + Q R R T +S ++ +
Sbjct: 621 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRT------PSRQTISVSDSHKIHELA 673
Query: 280 RGCDQSHRSPTRQEGAPRIPQSGLRT 357
+ + R +Q P+ P + T
Sbjct: 674 KSRENQQR---QQSATPKTPSESVST 696
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 163 RIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQE 321
R+ SA ++SN +S P K+R + S + ++ S +S +SP + E
Sbjct: 854 RVSSAKRMRSNDGASTSSRPAKRRRSNASSPKKQTASSSASSTKSLKSPVKLE 906
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 163 RIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQE 321
R+ SA ++SN +S P K+R + S + ++ S +S +SP + E
Sbjct: 808 RVSSAKRMRSNDGASTSSRPAKRRRSNASSPKKQTASSSASSTKSLKSPVKLE 860
>AF016451-9|AAB66005.2| 524|Caenorhabditis elegans
Udp-glucuronosyltransferase protein51 protein.
Length = 524
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 319 LVGSGSDGFDHSLVDCLL-IGFACSDGTYFSFFVAKMSSPSLRLTVRLTH 173
L G+ ++ VD ++ I F+C TY F +AK S +RL + H
Sbjct: 474 LPGAKMGNIEYYCVDTIVFIAFSCVTFTYIFFKMAKFSLSFIRLVKKPKH 523
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 184 VQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRS 306
+ +NA R+MT LP N HLS +ED R + H S
Sbjct: 1888 LSANACRIMTQLPINPSNIEHLS---TAEDDTRHLFEKHGS 1925
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 187 QSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQEG--APRIPQSGLRTP 360
Q KRV + P+K LSR + ++ D S + T Q+ AP+ P++ +TP
Sbjct: 27 QKGVKRVAQTPPEKDAKKVKLSRDSSNQSVIELSDTSPQKETSQQSPKAPKTPKTP-KTP 85
>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
protein R10F2.6 protein.
Length = 1150
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 225 KKEKYVPSEQAKPIRRQSTRL*SKPSEPDPTRR 323
++++ P KPIRR+ RL KP +P +R
Sbjct: 1044 ERDERSPYFDGKPIRRKPLRLGDKPRDPKRPKR 1076
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 184 VQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRS 306
+ +NA R+MT LP N HLS +ED R + H S
Sbjct: 1824 LSANACRIMTQLPINPSNIEHLS---TAEDDTRHLFEKHGS 1861
>Z75533-1|CAA99815.1| 423|Caenorhabditis elegans Hypothetical
protein C54G4.2 protein.
Length = 423
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 163 RIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQEGA 327
++ S ++ + +R + S+ QK R + ++ + +RRG + R P +EG+
Sbjct: 357 KMESTFSISYDRRRPVLSI-QKFRKKYKKRLRSAMDQARRGSREGSREPVSREGS 410
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 217 LPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQEGAPRIPQS 345
LP+++R+T+ R+NR + RG S + E P S
Sbjct: 621 LPRQERSTYKRKRKNREREIGRGTQGSSSANPNVEYVTASPNS 663
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 12 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 152
PS L +V A + C + R+P Y + R +GN P +D+
Sbjct: 20 PSSLFVVHTLDASHLCQIVRLPAVYKAASQGRKQVGNLIKPNTMSDE 66
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +1
Query: 148 MITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQEGA 327
++T ++S V S+ RV Q K + + ++ ++ + SP + GA
Sbjct: 296 IVTVNAVKSYEGVLSDYIRVTPLTQQAKTSAPAETPDLQTPPRQQASAKPQASPAKSAGA 355
Query: 328 PRIPQ 342
P++PQ
Sbjct: 356 PQLPQ 360
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = +1
Query: 121 TSNCQNTSMMITSRRIRSASNVQSNAK-RVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQS 297
T CQ S R R Q+ + R + Q++ R+ + E+ + +
Sbjct: 149 TGGCQKNSENEKERNRREREEQQTKERERRLEEEKQRRDAEAEAERRRKEEEELEEANYT 208
Query: 298 HRSPTRQEGAPRIP 339
R+P Q G P P
Sbjct: 209 LRAPKSQNGEPITP 222
>Z81496-13|CAB04075.1| 365|Caenorhabditis elegans Hypothetical
protein Y102A5C.1 protein.
Length = 365
Score = 25.8 bits (54), Expect = 9.1
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -3
Query: 274 CLLIGFACSDGTYFSFFVAKMSSPSLRLTVRLTHFLFFLK*SSLKCFGSLKLPSEILVEV 95
C +IG +C D F F+ + ++ +L L F K SSL F +P EILV++
Sbjct: 34 CDVIGDSCMDYVDFEFWFMRFANGNLNLDFN------FDKSSSLSIF---NIPIEILVKI 84
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
gene nameprotein 213 protein.
Length = 1437
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 223 QKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQEGAPRIP 339
+KK + R+ R S G +S + PT ++G + P
Sbjct: 1222 EKKATVDNKERKKRPGKSSHGSKESKKEPTTEDGEVKTP 1260
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 357 SPKAALRYPRSTFLSGRAPMALITASST 274
+P A L P ++ +SGRAP AL T+S T
Sbjct: 804 NPTAEL--PTTSEISGRAPQALPTSSQT 829
>AL031627-26|CAA20972.1| 365|Caenorhabditis elegans Hypothetical
protein Y102A5C.1 protein.
Length = 365
Score = 25.8 bits (54), Expect = 9.1
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -3
Query: 274 CLLIGFACSDGTYFSFFVAKMSSPSLRLTVRLTHFLFFLK*SSLKCFGSLKLPSEILVEV 95
C +IG +C D F F+ + ++ +L L F K SSL F +P EILV++
Sbjct: 34 CDVIGDSCMDYVDFEFWFMRFANGNLNLDFN------FDKSSSLSIF---NIPIEILVKI 84
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 240 VPSEQAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDS 359
+ S A+P +++T KP+ P R+ + D+SK+P S
Sbjct: 366 ISSSLAEPENKENT----KPNSPYSLRKRAVDSSKKPGKS 401
>AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7b protein.
Length = 404
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 217 LPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQEGAPR 333
LP+ R + +NRS S HRSP R+ R
Sbjct: 312 LPEPSRRFNRFNHRNRSPPSLSSRTSRHRSPERRRDRSR 350
>AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7a protein.
Length = 480
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 217 LPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQEGAPR 333
LP+ R + +NRS S HRSP R+ R
Sbjct: 388 LPEPSRRFNRFNHRNRSPPSLSSRTSRHRSPERRRDRSR 426
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,399,448
Number of Sequences: 27780
Number of extensions: 158000
Number of successful extensions: 510
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -