Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40010
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   155   3e-38
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    38   0.007
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.6  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   3.5  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  155 bits (375), Expect = 3e-38
 Identities = 72/85 (84%), Positives = 81/85 (95%)
 Frame = +3

Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
           +IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+QVV
Sbjct: 82  KIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVV 141

Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
           ++PSFIVRLDS KHIDFSL+SP+GG
Sbjct: 142 DVPSFIVRLDSQKHIDFSLQSPYGG 166



 Score =  134 bits (324), Expect = 5e-32
 Identities = 63/79 (79%), Positives = 72/79 (91%)
 Frame = +1

Query: 19  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 198
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 199 EEKDPKRLFEGNALLRRLV 255
           E+KDPKRLFEGNALLRRLV
Sbjct: 63  EDKDPKRLFEGNALLRRLV 81



 Score = 35.1 bits (77), Expect = 0.040
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +2

Query: 509 GRPGRVKRKNLRKGQGGG 562
           GRPGRVKR+ LRKG G G
Sbjct: 167 GRPGRVKRRTLRKGDGAG 184


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +3

Query: 321 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 500
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S 
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164

Query: 501 FGGVVLDVSRGR 536
               V+D +  R
Sbjct: 165 IKKHVMDYNNTR 176


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 275 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 445
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 438 CSQLACGHEYAFAGSKFWHDG 376
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 441 GCSQLACGHEYAFAGSKFWH 382
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +3

Query: 309 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +3

Query: 309 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,289,162
Number of Sequences: 27780
Number of extensions: 303524
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)