Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40008
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   114   4e-26
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   3.0  
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U80030-2|AAG24161.2|  362|Caenorhabditis elegans Serpentine rece...    27   6.9  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  114 bits (274), Expect = 4e-26
 Identities = 56/88 (63%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 171
           ++QTE+AF KQ TV LN K  +    +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ G
Sbjct: 2   SEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAG 61

Query: 172 NVSIRGRILTGVVQKMKMQRTIVIRRDY 255
           NV IRG ILTGVV K KM RTIV+RRDY
Sbjct: 62  NVPIRGMILTGVVLKNKMTRTIVVRRDY 89



 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 39/53 (73%), Positives = 45/53 (84%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 90  LHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 70   SSCHLSCSGKRWPVSETLSLSD 5
            +SC++ CSG++W   E  S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 70   SSCHLSCSGKRWPVSETLSLSD 5
            +SC++ CSG++W   E  S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 407 QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 303
           +++E  CF Q   F D +N+T L + +  R M+ H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>U80030-2|AAG24161.2|  362|Caenorhabditis elegans Serpentine
           receptor, class w protein121 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 300 SCAVSRTYCIWVGSEVIAADHDSSLHLHF 214
           SCA +RTY  +VGSE+   D++ S+  +F
Sbjct: 193 SCAPNRTYYEYVGSELF-MDNEGSIAKYF 220


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 305 VRAFVALLQGRGDW*YCNDRRMQ 373
           +RAFV L++   DW Y   RRMQ
Sbjct: 250 LRAFVRLIRNNSDW-YARYRRMQ 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,703,014
Number of Sequences: 27780
Number of extensions: 219292
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)