Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40007
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    59   3e-09
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    59   3e-09
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    59   3e-09
U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.    29   2.9  
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.    29   2.9  
U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homo...    28   5.1  
U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protei...    28   5.1  
Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone...    28   6.7  
U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone...    28   6.7  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +2

Query: 284 VFGSLIIGYARNPSLKXQWFSYAILGFALSE 376
           VFG+L+IGYARNPSLK Q FSYAILGFALSE
Sbjct: 45  VFGALVIGYARNPSLKQQLFSYAILGFALSE 75



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
           A R   TT   KDIDSAAK+IGAGAATVG
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVG 34


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +2

Query: 284 VFGSLIIGYARNPSLKXQWFSYAILGFALSE 376
           VFG+L+IGYARNPSLK Q FSYAILGFALSE
Sbjct: 45  VFGALVIGYARNPSLKQQLFSYAILGFALSE 75



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
           A R   TT   KDIDSAAK+IGAGAATVG
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVG 34


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +2

Query: 284 VFGSLIIGYARNPSLKXQWFSYAILGFALSE 376
           VFG+L+IGYARNPSLK Q FSYAILGFALSE
Sbjct: 69  VFGALVIGYARNPSLKQQLFSYAILGFALSE 99



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
           A R   TT   KDIDSAAK+IGAGAATVG
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVG 58


>U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical
           protein T12E12.2 protein.
          Length = 891

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
 Frame = -1

Query: 418 EQQERHHKTEQTHSLRQGETQNGV*EPLLLEGG--VPGIADDEGAEDCSNSSSGTSYPTV 245
           E+Q R  + +  H+    ET+  V +  +   G  +P I+D EGA     SSS  S P +
Sbjct: 136 EEQNRKEQAKNPHA--SAETEPAVKKKKIEGVGSRIPKISDREGAGTSGQSSSNVSTPGI 193

Query: 244 AAPAPMNLAAESMSLVTDVVWKDRTAESC-----VGTALPSV----YGWCTAASGRTSAE 92
               P++     M   ++ + +  T E       +GT  PS+    Y     A+G TS +
Sbjct: 194 ---TPLDNKTPRMQKKSNEIGQASTPECAIATLSIGTPQPSIIDSTYDQSDIANGSTSPQ 250

Query: 91  LQ 86
            Q
Sbjct: 251 PQ 252


>Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical
           protein F54B11.3b protein.
          Length = 879

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 291 PKTVPIPAPEPAIPLSLHQ 235
           PK +P+PAP PA P+ +HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857


>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
           protein F54B11.3a protein.
          Length = 1111

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 291 PKTVPIPAPEPAIPLSLHQ 235
           PK +P+PAP PA P+ +HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857


>AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.
          Length = 879

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 291 PKTVPIPAPEPAIPLSLHQ 235
           PK +P+PAP PA P+ +HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857


>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
          Length = 1111

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 291 PKTVPIPAPEPAIPLSLHQ 235
           PK +P+PAP PA P+ +HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857


>U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homolog
           protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 301 DEGAEDCSNSSSGTSYPTVAAPAPMNLAAES--MSLVTDVVWKDRTAESCVGTALPSVYG 128
           D  + D    +S +S P  ++PA  +L+ ES   SL    +  D+   SC   A  S   
Sbjct: 23  DISSLDLGALTSTSSSPGSSSPAMFDLSNESELRSLFCGKLKVDKKQSSCASNASTSSQP 82

Query: 127 WCTAASGRTSAE 92
           +C++   R S++
Sbjct: 83  YCSSPPARKSSK 94


>U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protein 1
           protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 301 DEGAEDCSNSSSGTSYPTVAAPAPMNLAAES--MSLVTDVVWKDRTAESCVGTALPSVYG 128
           D  + D    +S +S P  ++PA  +L+ ES   SL    +  D+   SC   A  S   
Sbjct: 23  DISSLDLGALTSTSSSPGSSSPAMFDLSNESELRSLFCGKLKVDKKQSSCASNASTSSQP 82

Query: 127 WCTAASGRTSAE 92
           +C++   R S++
Sbjct: 83  YCSSPPARKSSK 94


>Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical
           protein R10D12.2 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 143 TICVWVVYCCKWSHQCRVAEDGRPGCR 63
           T+ + + Y CK S+ C V+   R GCR
Sbjct: 81  TVSLKIQYVCKQSNNCIVSHAVRSGCR 107


>U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform b protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 158 CRDSITICVW--VVYCCKWSHQCRVAEDGRPGCR 63
           C+      VW  + Y C+++ QC + +D R  CR
Sbjct: 40  CKGFFRRSVWQNLQYTCRFNKQCNIDKDHRNACR 73


>U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform a protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 158 CRDSITICVW--VVYCCKWSHQCRVAEDGRPGCR 63
           C+      VW  + Y C+++ QC + +D R  CR
Sbjct: 40  CKGFFRRSVWQNLQYTCRFNKQCNIDKDHRNACR 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,701
Number of Sequences: 27780
Number of extensions: 329813
Number of successful extensions: 1296
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)