Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30034
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   143   1e-34
AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    37   0.012
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    28   7.4  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    28   7.4  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  143 bits (346), Expect = 1e-34
 Identities = 66/86 (76%), Positives = 75/86 (87%)
 Frame = -1

Query: 513 KNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKA 334
           K K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGGMKVKA
Sbjct: 6   KGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKA 65

Query: 333 DRDEASPYAAMLAAQDVAEKCKTLGI 256
           DRDE+SPYAAMLAAQDVA++CK LGI
Sbjct: 66  DRDESSPYAAMLAAQDVADRCKQLGI 91



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = -3

Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
           ALHIKLRA           GAQ          MKIGRIEDVTP+PSD T
Sbjct: 93  ALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141


>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 572 MRRNPRKVTWTVLYRRKFKKG 634
           +RRNPR + WTVLYR K KKG
Sbjct: 42  LRRNPRDIRWTVLYRIKNKKG 62


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
            protein.
          Length = 1668

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = -3

Query: 601  PCYFTRIPPHQMGGFTFSALKLKAEPWPREKQSC*RGGPGDPRAPAFSGRNSVWCS 434
            PC +  +P + +      +   + +P P EK +  +  PG+  +   +G +  WC+
Sbjct: 1171 PCMYMLLPIYSVCNMHTVSWGTREDPRPTEKNTLAKKTPGNLESGDGAGNSENWCT 1226


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
            protein 2 protein.
          Length = 1668

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = -3

Query: 601  PCYFTRIPPHQMGGFTFSALKLKAEPWPREKQSC*RGGPGDPRAPAFSGRNSVWCS 434
            PC +  +P + +      +   + +P P EK +  +  PG+  +   +G +  WC+
Sbjct: 1171 PCMYMLLPIYSVCNMHTVSWGTREDPRPTEKNTLAKKTPGNLESGDGAGNSENWCT 1226


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 471 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 343
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,541
Number of Sequences: 27780
Number of extensions: 337733
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)