Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30024
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.51 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   4.7  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical p...    28   8.3  
AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin ...    28   8.3  
AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like ...    28   8.3  

>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 111 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 224
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 176 GKEGRGYQGSREASDRKRQEEHHGLRHQLWTKDGK 280
           G+E R Y   R   DR+RQ++    R   W  D +
Sbjct: 846 GREHRDYDRDRSQIDRRRQDDMGARRRSRWGDDDR 880


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 420 PKTKPARKSPGSLPPCWKTTE--FTSRSCPPR 509
           PKT+P    P ++P CW+     F     PPR
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPR 449


>Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 466 VGKQQSLLQDHVHRDKQYLKLDNTKGSSDDRI 561
           V + +   +D +H D+QY +L   KG  +DR+
Sbjct: 412 VDRLRIFTEDQMHMDEQYRQLYERKGELEDRL 443


>Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 466 VGKQQSLLQDHVHRDKQYLKLDNTKGSSDDRI 561
           V + +   +D +H D+QY +L   KG  +DR+
Sbjct: 412 VDRLRIFTEDQMHMDEQYRQLYERKGELEDRL 443


>AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin
           BMK-1 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 466 VGKQQSLLQDHVHRDKQYLKLDNTKGSSDDRI 561
           V + +   +D +H D+QY +L   KG  +DR+
Sbjct: 412 VDRLRIFTEDQMHMDEQYRQLYERKGELEDRL 443


>AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like
           protein KLP-14 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 466 VGKQQSLLQDHVHRDKQYLKLDNTKGSSDDRI 561
           V + +   +D +H D+QY +L   KG  +DR+
Sbjct: 412 VDRLRIFTEDQMHMDEQYRQLYERKGELEDRL 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,561,030
Number of Sequences: 27780
Number of extensions: 377519
Number of successful extensions: 1465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)