Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30022
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 73 2e-13
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 73 2e-13
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 29 4.7
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 29 4.7
AF100656-11|AAF99960.1| 115|Caenorhabditis elegans Hypothetical... 29 4.7
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 29 4.7
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr... 28 8.3
AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical ... 28 8.3
AL132904-5|CAC35837.2| 406|Caenorhabditis elegans Hypothetical ... 28 8.3
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform a
protein.
Length = 984
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/70 (42%), Positives = 40/70 (57%)
Frame = +3
Query: 9 DGKGPEVIDDWPLHPAHGVNTTLVVGACWQGTEKDMKHHLRGWLAGLGVLRGAAQPSHAL 188
D + PE++DDWPLH T LVVGACW G ++ + RG L+ L +L GA + A+
Sbjct: 464 DERNPEILDDWPLHKTKATKTKLVVGACWHGRQQKLAQFFRGQLSSLYLLSGAVESERAI 523
Query: 189 SCLARCREGL 218
C C E L
Sbjct: 524 KCAHTCPEQL 533
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/70 (42%), Positives = 40/70 (57%)
Frame = +3
Query: 9 DGKGPEVIDDWPLHPAHGVNTTLVVGACWQGTEKDMKHHLRGWLAGLGVLRGAAQPSHAL 188
D + PE++DDWPLH T LVVGACW G ++ + RG L+ L +L GA + A+
Sbjct: 464 DERNPEILDDWPLHKTKATKTKLVVGACWHGRQQKLAQFFRGQLSSLYLLSGAVESERAI 523
Query: 189 SCLARCREGL 218
C C E L
Sbjct: 524 KCAHTCPEQL 533
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -3
Query: 166 APRSTPSPASQPR-RWCFISFSVPCQQAPTTRVVLTPC---AGCRGQSSITSGPLPSS 5
AP P P PR F + S+ +PTT V TP + C SS+ S PS+
Sbjct: 187 APPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPST 244
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -3
Query: 166 APRSTPSPASQPR-RWCFISFSVPCQQAPTTRVVLTPC---AGCRGQSSITSGPLPSS 5
AP P P PR F + S+ +PTT V TP + C SS+ S PS+
Sbjct: 187 APPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPST 244
>AF100656-11|AAF99960.1| 115|Caenorhabditis elegans Hypothetical
protein F49F1.12 protein.
Length = 115
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 235 RSGARLSPSRQRARQESACEGCAAPRSTPSPASQP 131
RS + RQR + C+ RSTP PA +P
Sbjct: 63 RSANQNRQKRQRCGTSRCSDSCSGSRSTPIPACRP 97
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -3
Query: 166 APRSTPSPASQPR-RWCFISFSVPCQQAPTTRVVLTPC---AGCRGQSSITSGPLPSS 5
AP P P PR F + S+ +PTT V TP + C SS+ S PS+
Sbjct: 187 APPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPST 244
>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
W02C12.1 protein.
Length = 1372
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 205 QRARQESACEGCAAPRSTPSPASQPRRWCF 116
Q QES C+ CA +T +P + CF
Sbjct: 1120 QNEEQESTCKLCAPDHTTAAPGATAESQCF 1149
>AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical
protein Y111B2A.9b protein.
Length = 326
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 232 SGARLSPSRQRARQESACEGCAAPRSTPSP 143
S SP AR ++C+GC P P P
Sbjct: 236 SSPMCSPQSVAARASASCDGCNGPPPPPQP 265
>AL132904-5|CAC35837.2| 406|Caenorhabditis elegans Hypothetical
protein Y111B2A.9a protein.
Length = 406
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 232 SGARLSPSRQRARQESACEGCAAPRSTPSP 143
S SP AR ++C+GC P P P
Sbjct: 316 SSPMCSPQSVAARASASCDGCNGPPPPPQP 345
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,427
Number of Sequences: 27780
Number of extensions: 321180
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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