Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30003
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   174   4e-44
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   174   4e-44
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    92   3e-19
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        92   3e-19
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    61   6e-10
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC006651-8|AAX22286.1|  716|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical...    27   9.6  
AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score =  174 bits (424), Expect = 4e-44
 Identities = 77/85 (90%), Positives = 80/85 (94%)
 Frame = -2

Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
           +EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGG
Sbjct: 741 VEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGG 800

Query: 331 QAFPQCVFDHWQVLPGDPCEPQSKP 257
           QAFPQCVFDHWQVLPGDP E  +KP
Sbjct: 801 QAFPQCVFDHWQVLPGDPLEAGTKP 825



 Score =  104 bits (249), Expect = 7e-23
 Identities = 44/59 (74%), Positives = 54/59 (91%)
 Frame = -3

Query: 687 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 511
           +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PRL+EPVYL
Sbjct: 682 REGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYL 740



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 290 PWRPVRTSEQALNVVQETRKRKGLKEGLP 204
           P  P+    +   +V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score =  174 bits (424), Expect = 4e-44
 Identities = 77/85 (90%), Positives = 80/85 (94%)
 Frame = -2

Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
           +EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGG
Sbjct: 741 VEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGG 800

Query: 331 QAFPQCVFDHWQVLPGDPCEPQSKP 257
           QAFPQCVFDHWQVLPGDP E  +KP
Sbjct: 801 QAFPQCVFDHWQVLPGDPLEAGTKP 825



 Score =  104 bits (249), Expect = 7e-23
 Identities = 44/59 (74%), Positives = 54/59 (91%)
 Frame = -3

Query: 687 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 511
           +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PRL+EPVYL
Sbjct: 682 REGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYL 740



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 290 PWRPVRTSEQALNVVQETRKRKGLKEGLP 204
           P  P+    +   +V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 38/81 (46%), Positives = 55/81 (67%)
 Frame = -2

Query: 514  SLEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTG 335
            ++E+  P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T 
Sbjct: 837  TVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQ 896

Query: 334  GQAFPQCVFDHWQVLPGDPCE 272
            GQAF    F HWQ++PGDP +
Sbjct: 897  GQAFCMSAFHHWQLVPGDPLD 917



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 30/58 (51%), Positives = 41/58 (70%)
 Frame = -3

Query: 687 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVY 514
           +EG + EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PRLMEP Y
Sbjct: 779 REGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYY 836


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 38/81 (46%), Positives = 55/81 (67%)
 Frame = -2

Query: 514 SLEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTG 335
           ++E+  P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T 
Sbjct: 712 TVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQ 771

Query: 334 GQAFPQCVFDHWQVLPGDPCE 272
           GQAF    F HWQ++PGDP +
Sbjct: 772 GQAFCMSAFHHWQLVPGDPLD 792



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 30/58 (51%), Positives = 41/58 (70%)
 Frame = -3

Query: 687 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVY 514
           +EG + EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PRLMEP Y
Sbjct: 654 REGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYY 711


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical protein
            K10C3.5a protein.
          Length = 894

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
 Frame = -2

Query: 571  KMLVCMSANCSAPSHGACISL-------EIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 413
            +M+  + A+CSA +    + L        +     A+G ++ VL++R+  V  E     T
Sbjct: 734  QMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEAT 793

Query: 412  PMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 278
             +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 794  NLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 838


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/55 (43%), Positives = 28/55 (50%)
 Frame = -2

Query: 442 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 278
           V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 55  LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 174
           +L+ LR+C+       C + TC K FP ++V L+  ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 517 ISLEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 338
           + +E   P    G +   L +R   +       G    I +A  P+++ FG+T++LRS T
Sbjct: 647 MKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELRSLT 704

Query: 337 GGQ 329
            G+
Sbjct: 705 EGK 707


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 287 REDLPMVEYALREGLSAGVGTQIGSKTERLID 382
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


>AC006651-8|AAX22286.1|  716|Caenorhabditis elegans Hypothetical
           protein H06I04.3b protein.
          Length = 716

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 624 LHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLWK 505
           L T  + +GG  +    R   Y+CL+    +L + V++WK
Sbjct: 143 LATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWK 182


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 624 LHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLWK 505
           L T  + +GG  +    R   Y+CL+    +L + V++WK
Sbjct: 143 LATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWK 182


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 624 LHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLWK 505
           L T  + +GG  +    R   Y+CL+    +L + V++WK
Sbjct: 143 LATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWK 182


>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
           protein R06F6.4 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 669 EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 538
           + NL     +++  TLH   +HR     IP  R CLY C L AQ
Sbjct: 309 KRNLCEKLLDLFQDTLHDHNVHR-----IPVLR-CLYICSLAAQ 346


>AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical
           protein F53C3.1 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 296 GPPWRPVRTSEQALNVVQETRK--RKGLKEGLP 204
           G PWR  +   + L + + TRK  R  L +G+P
Sbjct: 230 GLPWRHCKVKNEVLKIKENTRKDNRAALYKGIP 262


>AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical
           protein C10F3.4a protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 267 RASPKRCTGNEKEERIEGRSPRL 199
           RA P R TG EKEE   G  P+L
Sbjct: 307 RAQPIRTTGAEKEEDRRGERPQL 329


>AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical
           protein C10F3.4b protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 267 RASPKRCTGNEKEERIEGRSPRL 199
           RA P R TG EKEE   G  P+L
Sbjct: 331 RAQPIRTTGAEKEEDRRGERPQL 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,071,459
Number of Sequences: 27780
Number of extensions: 365450
Number of successful extensions: 929
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)