Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10416
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    76   3e-14
AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z81537-6|CAB04378.1|  106|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical p...    28   8.4  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 29/57 (50%), Positives = 42/57 (73%)
 Frame = +2

Query: 29  NKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFKKSESF 199
           N+   WPRG+V GGSS++N M YVRG+  DY+ W  +G  GW++ + LPYFKK+E++
Sbjct: 109 NRVFYWPRGRVWGGSSTLNAMCYVRGHAYDYNRWEKEGASGWNYANCLPYFKKAETY 165



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
 Frame = +3

Query: 567 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPV 719
           +V+++ GAIN+PQLL+LSG+GP  HL    I + A+LP VG+NLQDHL + V
Sbjct: 297 DVILAGGAINTPQLLMLSGVGPADHLRSHEIPIVANLPGVGQNLQDHLEIYV 348



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = +1

Query: 337 DCNGDSQIGVMKSFTTTKGGTRFSTARAFLSPIKDRKNLHVIKNAIATKIVFKPGTNKSV 516
           D NG+ Q G+     T   G R+S ++A++ PI++R NL        T+++F   TNK++
Sbjct: 211 DMNGEKQEGISTMDMTIHNGERWSASKAYVHPIRNRPNLITSSGITCTRVLF--DTNKAI 268


>AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical
           protein ZC328.2 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
 Frame = -3

Query: 331 SSSVLILLQP*LSNLRFRAYYRQKLHEITALAVVFSRLRVKFTHEAFTFLKVGQDVLETP 152
           S S L L  P LS L F       L    +      R + +FT +   F  +G     TP
Sbjct: 103 SVSSLALSPPGLSPLNFNDGSPFSLSSTPSSTSSLVRNQNRFTFDHIPF--IGSSTNSTP 160

Query: 151 AFISIGSPFVVIGLVTSNVKHQIDA--AASTEHLTTWPSASLVFVGTT 14
           A  S G P +  G    N++H+  A    S  H +       V +GT+
Sbjct: 161 ATASTGPPGLSPGGAALNIEHEKSAFEIVSCHHQSAEEILQRVRLGTS 208


>Z81537-6|CAB04378.1|  106|Caenorhabditis elegans Hypothetical
           protein F41D3.7 protein.
          Length = 106

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 570 VVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLPVGENLQD 701
           + +S G +N+  L LL GI   + +  +  EVKADL +   + D
Sbjct: 46  IEMSEGRMNNATLKLLEGIDVTEAVTTVTSEVKADLKIAIVVDD 89


>Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D2.13 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 700 SCKFSPTGKSALTSMFRSSKCLRGPIPESNNSCGELIAPAETTTSFLT 557
           +C   P+  S L S    S      IP+S++SC    A    T +F T
Sbjct: 185 TCSRCPSSTSTLISSTAISSSCTSYIPDSSSSCASWAANGFCTNNFYT 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,954
Number of Sequences: 27780
Number of extensions: 390105
Number of successful extensions: 1101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)