Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10404
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   148   2e-36
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.027
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.3  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  148 bits (359), Expect = 2e-36
 Identities = 65/80 (81%), Positives = 74/80 (92%)
 Frame = +1

Query: 22  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 202 QPNSAIRKCVRVQLIKNGRK 261
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score =  121 bits (292), Expect = 3e-28
 Identities = 54/65 (83%), Positives = 60/65 (92%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
           KK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KK
Sbjct: 79  KKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138

Query: 435 ERPRS 449
           ERPRS
Sbjct: 139 ERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 148 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 243
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 93  VRPSLFTTVVHVLTRRSYSSG 31
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 385 TLKRTPGMSPTA*PLRPNPATSTSS 311
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 385 TLKRTPGMSPTA*PLRPNPATSTSS 311
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 264 TAFVPRDGCLNHIEEN 311
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,663
Number of Sequences: 27780
Number of extensions: 303893
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)