Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10403
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35637-4|CAA84686.1|   68|Caenorhabditis elegans Hypothetical pr...    31   0.95 
U64833-2|AAB04815.1|  214|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF016666-3|AAB66085.1|  212|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z35637-4|CAA84686.1|   68|Caenorhabditis elegans Hypothetical
           protein C03C10.5 protein.
          Length = 68

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 401 CKYNNFLFFWLWNELHSTVFAERYDISFFKNEACRE 508
           C     ++ W  N+ H+T +   Y  +FF  E CRE
Sbjct: 18  CSIGETIYTWTQNK-HATTYVGTYTKAFFSGEVCRE 52


>U64833-2|AAB04815.1|  214|Caenorhabditis elegans Hypothetical
           protein B0507.5 protein.
          Length = 214

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 413 NFLFFWLWNELHSTVFAERYDISFFKNE 496
           NF+F+W W +  + + A  YD+S   NE
Sbjct: 64  NFIFYWFWIQFETLLNARYYDLSQKINE 91


>AF016666-3|AAB66085.1|  212|Caenorhabditis elegans Hypothetical
           protein B0281.6 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 16  MISALHYLSYKTCLHNFELFKSMKTFIVRN 105
           ++  +HYL+YK  LH   L      F+ RN
Sbjct: 122 VVVVIHYLAYKNQLHTIPLGFKFSEFVERN 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,904
Number of Sequences: 27780
Number of extensions: 300297
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)