Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10402
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    30   2.1  
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    30   2.1  
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    30   2.1  
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ...    28   6.4  
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ...    28   6.4  
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 640 STLTYNNLDTITNSAITPASPLLNSIKYSY 551
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 576 SALTINNLSLIVSGLLTLACPLLTSIAGQY 605


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 640 STLTYNNLDTITNSAITPASPLLNSIKYSY 551
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 521 SALTINNLSLIVSGLLTLACPLLTSIAGQY 550


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 640 STLTYNNLDTITNSAITPASPLLNSIKYSY 551
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 576 SALTINNLSLIVSGLLTLACPLLTSIAGQY 605


>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical protein
            F36H2.1c protein.
          Length = 1071

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 349  VLVSHLYTVISRFCVLDQYLSY--FFLSVIFNRFVCQIYYANFSRFKLILIKSYVTTCIM 522
            +L+ H      R C L Q++ +    +S +   F C  Y+A+ S ++ +L+ +Y T   M
Sbjct: 852  LLLVHGRFCYKRSCALSQFVMHRGLIISTMQAIFSCVFYFASVSLYQGVLMVAYSTCYTM 911

Query: 523  V 525
            +
Sbjct: 912  L 912


>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 349 VLVSHLYTVISRFCVLDQYLSY--FFLSVIFNRFVCQIYYANFSRFKLILIKSYVTTCIM 522
           +L+ H      R C L Q++ +    +S +   F C  Y+A+ S ++ +L+ +Y T   M
Sbjct: 816 LLLVHGRFCYKRSCALSQFVMHRGLIISTMQAIFSCVFYFASVSLYQGVLMVAYSTCYTM 875

Query: 523 V 525
           +
Sbjct: 876 L 876


>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical protein
            F36H2.1a protein.
          Length = 1074

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 349  VLVSHLYTVISRFCVLDQYLSY--FFLSVIFNRFVCQIYYANFSRFKLILIKSYVTTCIM 522
            +L+ H      R C L Q++ +    +S +   F C  Y+A+ S ++ +L+ +Y T   M
Sbjct: 855  LLLVHGRFCYKRSCALSQFVMHRGLIISTMQAIFSCVFYFASVSLYQGVLMVAYSTCYTM 914

Query: 523  V 525
            +
Sbjct: 915  L 915


>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
            protein F36H2.1c protein.
          Length = 1071

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 349  VLVSHLYTVISRFCVLDQYLSY--FFLSVIFNRFVCQIYYANFSRFKLILIKSYVTTCIM 522
            +L+ H      R C L Q++ +    +S +   F C  Y+A+ S ++ +L+ +Y T   M
Sbjct: 852  LLLVHGRFCYKRSCALSQFVMHRGLIISTMQAIFSCVFYFASVSLYQGVLMVAYSTCYTM 911

Query: 523  V 525
            +
Sbjct: 912  L 912


>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 349 VLVSHLYTVISRFCVLDQYLSY--FFLSVIFNRFVCQIYYANFSRFKLILIKSYVTTCIM 522
           +L+ H      R C L Q++ +    +S +   F C  Y+A+ S ++ +L+ +Y T   M
Sbjct: 816 LLLVHGRFCYKRSCALSQFVMHRGLIISTMQAIFSCVFYFASVSLYQGVLMVAYSTCYTM 875

Query: 523 V 525
           +
Sbjct: 876 L 876


>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
            protein F36H2.1a protein.
          Length = 1074

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 349  VLVSHLYTVISRFCVLDQYLSY--FFLSVIFNRFVCQIYYANFSRFKLILIKSYVTTCIM 522
            +L+ H      R C L Q++ +    +S +   F C  Y+A+ S ++ +L+ +Y T   M
Sbjct: 855  LLLVHGRFCYKRSCALSQFVMHRGLIISTMQAIFSCVFYFASVSLYQGVLMVAYSTCYTM 914

Query: 523  V 525
            +
Sbjct: 915  L 915


>AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical
           protein M57.1 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 567 PSNTLIGE--KIQRFLNHYTGRYIRFNQYKFKSREIRIIYLTHKAIE 433
           P+  LI E  +  RF +H+  +   FN+Y  + R IR++Y     +E
Sbjct: 35  PNRRLIPEDKRYPRFCSHFAPKMNEFNKYSIEER-IRLMYALRGKVE 80


>AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical
           protein K10G6.2 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 558 TLIGEKIQRFLNHYTGRYIRFNQYKFKSREIRII 457
           T + E+ +RF+NHY   Y R +     + E+RII
Sbjct: 52  TTLSEQCKRFVNHYR-HYCRSSNIATYNEEVRII 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,390
Number of Sequences: 27780
Number of extensions: 357451
Number of successful extensions: 972
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)