Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10397
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical pr...    90   2e-18
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical
           protein ZC302.1 protein.
          Length = 728

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 4/90 (4%)
 Frame = +2

Query: 2   ELLSDQIKNFSRTV----NYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVN 169
           E LSD   NF+++V    NY D NLN+  PI +IHGNHDD  G+G +++LD+L  +GLVN
Sbjct: 145 EFLSDASVNFNQSVFGHVNYYDQNLNVGLPIFTIHGNHDDLSGKG-LTALDLLHESGLVN 203

Query: 170 YFGKWTDYTHVRISPVLLQKGLTRLALYDL 259
            FGK ++     +SP+LL+KG TRLALY +
Sbjct: 204 LFGKHSNIQEFIVSPILLRKGETRLALYGI 233



 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
 Frame = +1

Query: 268 KDQRLSRLFAEKKVEMERPDETL-DWFNLFVLHQNHADRG-H---SNYIPEGVLPNFLDL 432
           +D RL R F    +   RP+    DWFNLFVLHQN   R  H    N++PE ++P F DL
Sbjct: 237 RDDRLVRAFKNNSISFLRPNAGAEDWFNLFVLHQNRPRRAMHRSTGNFLPESLIPQFFDL 296

Query: 433 VVWGHEHDSHICP--MKGNKTEKDSFFV 510
           ++WGHEH+    P  +  ++   D F++
Sbjct: 297 LIWGHEHECKPDPQYVASSEAVGDGFYI 324



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 42/68 (61%)
 Frame = +3

Query: 504 FCVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSEENIGS 683
           + +QPGSTVATSL   EAL K+  L++I    F   P+PLQTVRP +   ++L +   GS
Sbjct: 323 YILQPGSTVATSLTPEEALQKNAFLIKIKGRKFASKPIPLQTVRPMVCDELLLDKIPPGS 382

Query: 684 EDVNENEK 707
             + + ++
Sbjct: 383 RPILKTDR 390


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 533 CHSTTWLYTKKLSFSVLFPFIGQIWLSCSWPHTTRSKKFGSTPSG 399
           CH+   ++  K+S  VL   +  +   CS+    R+ K  ST SG
Sbjct: 3   CHTQKIVHYSKISMCVLLHQLSHVHFECSFRLAPRASKEKSTVSG 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,528,807
Number of Sequences: 27780
Number of extensions: 395680
Number of successful extensions: 896
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)