Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10395
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    64   9e-11
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    64   9e-11
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical...    28   9.4  

>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 32/62 (51%), Positives = 41/62 (66%)
 Frame = +2

Query: 2    DFAQRVTQLAEVADAVAAKRLQNVPVWLGGLLNPEAYITATRQCVAQANSWSLEELHLQV 181
            D  +R+ QL  +     A  L+    WLGG  +PEAYITATRQ VAQAN+WSLE+L+L +
Sbjct: 4418 DLNERLKQLIRIG---GADNLKRETFWLGGTFSPEAYITATRQQVAQANTWSLEQLNLHI 4474

Query: 182  TI 187
             I
Sbjct: 4475 HI 4476



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +1

Query: 265  TVKGNRLLLTNTIMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVRLPVAP 444
            +V GN+L L   +  +  +   +W +     +      LP+YL   R +L+  +   ++ 
Sbjct: 4497 SVGGNKLELCELVKSECDIVEFSWKQDVADGTR-----LPLYLYGDRRQLISPLAFHLSS 4551

Query: 445  GQEPHAFYERGVALLTSTAL 504
                  FY+RGVAL+ ++ L
Sbjct: 4552 AT---VFYQRGVALVANSTL 4568


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 32/62 (51%), Positives = 41/62 (66%)
 Frame = +2

Query: 2    DFAQRVTQLAEVADAVAAKRLQNVPVWLGGLLNPEAYITATRQCVAQANSWSLEELHLQV 181
            D  +R+ QL  +     A  L+    WLGG  +PEAYITATRQ VAQAN+WSLE+L+L +
Sbjct: 4418 DLNERLKQLIRIG---GADNLKRETFWLGGTFSPEAYITATRQQVAQANTWSLEQLNLHI 4474

Query: 182  TI 187
             I
Sbjct: 4475 HI 4476



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +1

Query: 265  TVKGNRLLLTNTIMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVRLPVAP 444
            +V GN+L L   +  +  +   +W +     +      LP+YL   R +L+  +   ++ 
Sbjct: 4497 SVGGNKLELCELVKSECDIVEFSWKQDVADGTR-----LPLYLYGDRRQLISPLAFHLSS 4551

Query: 445  GQEPHAFYERGVALLTSTAL 504
                  FY+RGVAL+ ++ L
Sbjct: 4552 AT---VFYQRGVALVANSTL 4568


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 256  QGATVKG--NRLLLTNTIMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVR 429
            QGAT         +++      P+  L W            + +PVY +S R++L+ +V 
Sbjct: 4093 QGATFDSFLRETTVSSAAYSQAPIVFLAWTSESSSTITGEQIQVPVYSSSERSDLICSVN 4152

Query: 430  LP 435
            +P
Sbjct: 4153 MP 4154


>AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical
           protein Y71G12B.26 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 187 YCHLQM*FF*RPGVSLSNALAG 122
           YC LQM FF  P + +S AL G
Sbjct: 154 YCALQMIFFVTPSLEISQALCG 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,037
Number of Sequences: 27780
Number of extensions: 361127
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)