Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10385
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    30   2.3  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = -1

Query: 790 GCAGASFTPSISFTHIKFWSCRCLSPCSLSDVQITA-KMRFYY*N*ESIYKNSYTIDNGK 614
           GC G +  PS+         C C SPC    V+  A   +    +  S    +  +DN  
Sbjct: 124 GCGGGAVVPSVRIPAQNDCCCGCSSPCKYKSVRRAAFAAKTIDPSCNSSELKNIILDNIS 183

Query: 613 TNATKENSNIIETGKYVKLATSHQPRLVC 527
            +A++   NI    K  +    H+  ++C
Sbjct: 184 EDASESKRNI---QKIAEETLGHEVNVIC 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,235
Number of Sequences: 27780
Number of extensions: 316744
Number of successful extensions: 880
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)