Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30102
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   132   2e-31
Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical...    29   3.3  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   5.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  132 bits (320), Expect = 2e-31
 Identities = 72/158 (45%), Positives = 90/158 (56%)
 Frame = +2

Query: 17  MKLNVSYPATGMPEVVRSGGRAQASYLLRKAHXXXXXXXXXXXXMEGLCTSCRWRQRQAR 196
           M+LN +YPATG+ +        +      K               +G          +  
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 197 IPDETGRPDKQPCSSSDVKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 376
            P + G            KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 377 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 490
           I GLTD  +PR+LGPKRASKIRKLFNL+K DDV +YV+
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158



 Score =  111 bits (266), Expect = 6e-25
 Identities = 49/67 (73%), Positives = 56/67 (83%)
 Frame = +3

Query: 54  QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 233
           QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQGFPMKQG+LTN R
Sbjct: 13  QKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGR 72

Query: 234 VRLLMSK 254
           VRLL+ K
Sbjct: 73  VRLLLKK 79


>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -1

Query: 317 YIHELIYVFSLHRGAVCNMSGL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA* 138
           ++  L+Y+   + G+V N   L H  T +A     +     L+ +   ++ YIA  ++A 
Sbjct: 68  FVFVLLYL-EFYFGSVYNCPALLHLHTLSAAFMSMVCWLSVLIPIFFGESIYIASRYVAH 126

Query: 137 LISLYFGAHALF 102
           +I  Y+G   +F
Sbjct: 127 VIYKYYGCQVIF 138


>AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical
           protein Y43F8C.10 protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 472 CTSLCRQTRAPSQEGKENAKPRHKAPKIQR 561
           CTS    T   S E K++ KP+ + P  QR
Sbjct: 90  CTSQSETTNESSGEDKDDGKPKERRPNCQR 119


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 45  RACQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 194
           + C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 270 KECVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,878
Number of Sequences: 27780
Number of extensions: 337716
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)