Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30098
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-5|AAR25650.1|  425|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF068719-3|AAM45352.1|  603|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF068719-2|AAC17783.1|  633|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U53340-5|AAR25650.1|  425|Caenorhabditis elegans Hypothetical
           protein F02E8.2b protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 231 CFAVESGSGVFIHP--CGLTRS-LLPVFFITRCYSFTVEVNREHLLSTYFIRQIGTRLRD 401
           C  V S    F +P    +T + +LP+FFI  CY   +    E   ST+    +GT   D
Sbjct: 235 CDLVTSPDSFFRYPFESAITITFVLPLFFIIYCYFRILVTLNEMSNSTHVHTPVGTARSD 294

Query: 402 SNTGALLHTN 431
           S      HT+
Sbjct: 295 SGAFPFPHTS 304


>AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical
           protein H35B03.1 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 442 SYPL-GHDDFVYTRPCTLRVRHF-----WKGGILVTSRGYAGFAERVNE 570
           ++PL G DD  +   C L   HF     W GGIL+TS       +R N+
Sbjct: 187 NFPLSGPDDSSFREICRLLKPHFETSYEWTGGILLTSDPVRLHVQRFND 235


>AF068719-3|AAM45352.1|  603|Caenorhabditis elegans Hypothetical
           protein H14N18.4b protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -2

Query: 197 VSRLVPDFTTNKNKNHSINVLGTING*YIVK--FREAIH-LAKHQTNKTAELVPNCFDFQ 27
           +S + P    NKN+N    V G   G YI+    +  I  L  +QT K A   P  F  Q
Sbjct: 480 MSSMSPMIIYNKNENRVEMVTGASGGSYIISATAQTVIRTLLFNQTVKAAVDAPR-FHNQ 538

Query: 26  YQPPFTQT 3
           Y P  T+T
Sbjct: 539 YLPETTET 546


>AF068719-2|AAC17783.1|  633|Caenorhabditis elegans Hypothetical
           protein H14N18.4a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -2

Query: 197 VSRLVPDFTTNKNKNHSINVLGTING*YIVK--FREAIH-LAKHQTNKTAELVPNCFDFQ 27
           +S + P    NKN+N    V G   G YI+    +  I  L  +QT K A   P  F  Q
Sbjct: 510 MSSMSPMIIYNKNENRVEMVTGASGGSYIISATAQTVIRTLLFNQTVKAAVDAPR-FHNQ 568

Query: 26  YQPPFTQT 3
           Y P  T+T
Sbjct: 569 YLPETTET 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,736
Number of Sequences: 27780
Number of extensions: 345350
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)